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Visualizing balances of compositional data: A new alternative to balance dendrograms.
1Bioinformatics Core Research Group, Deakin University, Geelong, Victoria, 3220, Australia.
F1000Research
|September 20, 2018
Summary
This study introduces the R package "balance" for visualizing compositional data balances, offering an intuitive alternative to balance dendrograms for high-dimensional datasets. The package simplifies complex data interpretation and scales effectively for large-scale analyses.
Area of Science:
- Statistics
- Bioinformatics
- Data Science
Background:
- Balances are crucial in compositional data analysis but challenging to conceptualize, especially with high-dimensional data.
- The balance dendrogram is a common visualization tool but lacks intuitiveness and scalability for large datasets.
Purpose of the Study:
- Introduce the R package 'balance' as a novel visualization method for compositional data balances.
- Provide an intuitive and scalable alternative to the balance dendrogram for high-dimensional data analysis.
Main Methods:
- Developed the 'balance' R package for visualizing compositional data.
- Implemented a projection onto a common scale to facilitate direct comparisons.
- Demonstrated visualization of subsets of balances without disrupting interpretation.
Main Results:
- The 'balance' package offers an alternative visualization that retains information from the balance dendrogram.
- This method projects data onto a common scale, enhancing interpretability and comparison.
- The package effectively visualizes balances for high-dimensional data, as shown with a meta-genomics dataset.
Conclusions:
- The 'balance' R package provides an intuitive and scalable solution for visualizing compositional data balances.
- This tool facilitates the analysis of complex, high-dimensional datasets, improving upon existing methods like the balance dendrogram.
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