Related Experiment Video
Updated: Feb 4, 2026

DNA Electrophoresis Using Thiazole Orange Instead of Ethidium Bromide or Alternative Dyes
Published on: March 31, 2019
The cationic dye basic orange 21 (BO21) as a potential fluorescent sensor
Zehavit Eizig Bar-On1, Mark A Iron, Harvey L Kasdan
1The Biophysical Interdisciplinary Schottenstein Center for the Research and Technology of the Cellome, Physics Department, Bar Ilan University, Ramat-Gan, 5290002 Israel. motti.jsc@gmail.com.
BO21 exhibits unique fluorescence properties, showing high polarization due to its short lifetime. Its fluorescence changes significantly with heparin and viscosity, suggesting potential as a biosensor for heparin levels and intracellular viscosity.
Area of Science:
- Biophysical Chemistry
- Fluorescence Spectroscopy
- Molecular Probes
Background:
- Understanding the fluorescence properties of novel molecular probes is crucial for developing advanced sensing technologies.
- BO21's structural similarity to fluorescein, yet distinct fluorescence characteristics, warrants detailed investigation.
Purpose of the Study:
- To investigate the fluorescence properties of BO21 and their dependence on intracellular conditions.
- To explore the potential of BO21 as a sensor for heparin and intracellular viscosity.
Main Methods:
- Spectroscopic analysis of BO21 in cell-free solutions under varying pH, temperature, viscosity, and in the presence of proteins and heparin.
- Measurement of quantum yield, fluorescence polarization (FP), and fluorescence lifetime (FLT).
- Analytical and experimental investigations, including theoretical calculations.
Main Results:
- Fluorescence spectra of BO21 are minimally affected by pH and temperature but significantly influenced by viscosity, proteins, and heparin.
- Heparin induces a red shift in the emission spectrum and increases fluorescence lifetime, suggesting aggregation.
- BO21 exhibits a surprisingly high FP (0.470) in water due to a very short lifetime, which decreases upon heparin addition.
Conclusions:
- BO21's high fluorescence polarization is linked to its short fluorescence lifetime.
- The molecule behaves as a molecular rotor, with its properties modulated by environmental factors like viscosity and heparin.
- BO21 shows promise as a sensor for detecting heparin levels and intracellular viscosity.
Related Concept Videos
Energy Basics
Basicity of Aliphatic Amines
To measure the basicity of amines, two conventions are generally used. The first defines Kb as the basicity constant for the deprotonation reaction of water by the amine, as presented in Figure 1. Conventionally, lower Kb indicates higher...
Basic Operations on Signals
Time Reversal mirrors a continuous-time signal about the vertical axis at t=0. This is achieved by substituting t with −t. For example, if a signal x(t) is considered, the time-reversed signal is x(−t). This operation can be graphically represented, showing the mirrored signal.
VSEPR Theory and the Basic Shapes
Basic Concept
Length, which measures the distance traveled by an object, is a fundamental concept in engineering mechanics. We use coordinates relative to a reference point to describe the distance. Length not only helps to describe the...
Cationic Chain-Growth Polymerization: Mechanism

