Related Experiment Video
Updated: Feb 4, 2026

Using an Automated Cell Counter to Simplify Gene Expression Studies: siRNA Knockdown of IL-4 Dependent Gene Expression in Namalwa Cells
Published on: April 14, 2010
Non-Invasive Gene Expression Testing to Rule Out Melanoma
J K Rivers1, M R Copley2, R Svoboda3
1Department of Dermatology and Skin Science, University of British Columbia, Vancouver, BC, Canada; Pacific Derm, Vancouver, BC, Canada.
The Pigmented Lesion Assay (PLA) gene expression test significantly reduces unnecessary skin biopsies for melanoma. This non-invasive test offers a high negative predictive value, improving diagnostic accuracy and patient outcomes.
Area of Science:
- Dermatology
- Molecular Diagnostics
- Oncology
Background:
- Melanoma diagnosis relies on visual inspection and histopathology, which has limitations.
- Current diagnostic methods have a low negative predictive value (NPV), leading to unnecessary biopsies.
- Atypical pigmented lesions pose a diagnostic challenge, often requiring invasive procedures.
Purpose of the Study:
- To evaluate the utility of the Pigmented Lesion Assay (PLA) in ruling out melanoma.
- To assess the impact of PLA on reducing surgical biopsies for skin lesions.
- To improve the accuracy and efficiency of melanoma diagnosis.
Main Methods:
- The Pigmented Lesion Assay (PLA) analyzes gene expression (PRAME, LINC00518) from skin samples collected non-invasively.
- The assay provides a binary result (positive/negative) based on gene expression levels.
- Results are compared to traditional histopathology for diagnostic accuracy.
Main Results:
- PLA demonstrates a very high negative predictive value (>99%), significantly outperforming traditional methods.
- The assay shows high specificity (69-91%), reducing false positives.
- Implementation of PLA reduced the number needed to biopsy for melanoma from 20-39 to 2.7, decreasing unnecessary procedures by 88%.
Conclusions:
- The Pigmented Lesion Assay (PLA) is a valuable tool for ruling out melanoma, reducing the need for surgical biopsies.
- PLA enhances diagnostic accuracy, minimizes invasive procedures, and offers significant healthcare cost savings.
- Integrating PLA into clinical practice improves patient care pathways for pigmented skin lesions.
Related Concept Videos
What is Gene Expression?
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
What is Gene Expression?
Cell Specific Gene Expression
Cell Specific Gene Expression
Chromatin Position Affects Gene Expression
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
mRNA Stability and Gene Expression
Cis-acting Elements involved in mRNA stability

