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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
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Analysis of solid tumor mutation profiles in liquid biopsy.
Sai A Balaji1,2, Ashwini Shanmugam1, Anuradha Chougule3
1Strand Life Sciences Pvt. Ltd., Bangalore, Karnataka, India.
Cancer Medicine
|September 29, 2018
Summary
Liquid biopsy shows promise for cancer management. Circulating tumor DNA (ctDNA) levels in plasma correlate with survival outcomes, aiding prognosis and treatment decisions.
Area of Science:
- Oncology
- Molecular Diagnostics
- Genomics
Background:
- Liquid biopsy offers a less invasive alternative to traditional tumor biopsies.
- It is valuable for cancer prognosis, treatment selection, and monitoring disease progression.
Purpose of the Study:
- To evaluate the concordance between tumor and plasma DNA mutation status.
- To assess the correlation between baseline circulating tumor DNA (ctDNA) levels and patient survival outcomes.
Main Methods:
- Matched tumor and plasma samples from 180 cancer patients (mostly early-stage) were analyzed.
- Tumor profiling used next-generation sequencing (NGS) or qPCR; plasma ctDNA was queried using ddPCR or NGS.
Main Results:
- Tumor-plasma concordance was 82% in advanced stages and 32% in early stages.
- Baseline ctDNA levels stratified patients into distinct survival groups: high ctDNA (poor outcome), undetectable ctDNA (good outcome), and low ctDNA (ambiguous outcome).
Conclusions:
- Liquid biopsy, particularly ctDNA analysis, is a powerful tool for cancer patient management.
- ctDNA levels provide valuable prognostic information and can guide therapeutic decisions across various cancer stages.
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