Related Experiment Video
Updated: Feb 3, 2026

In Vitro SUMOylation Assay to Study SUMO E3 Ligase Activity
Published on: January 29, 2018
The SUMO E3 Ligase MdSIZ1 Targets MdbHLH104 to Regulate Plasma Membrane H+-ATPase Activity and Iron Homeostasis
Li-Jie Zhou1, Chun-Ling Zhang1, Rui-Fen Zhang1,2
1State Key Laboratory of Crop Biology, National Research Center for Apple Engineering and Technology, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong 271018, China.
Abstract:
SIZ1 (a SIZ/PIAS-type SUMO E3 ligase)-mediated small ubiquitin-like modifier (SUMO) modification of target proteins is important for various biological processes related to abiotic stress resistance in plants; however, little is known about its role in resistance toward iron (Fe) deficiency. Here, the SUMO E3 ligase MdSIZ1 was shown to be involved in the plasma membrane (PM) H+-ATPase-mediated response to Fe deficiency. Subsequently, a basic helix-loop-helix transcription factor, MdbHLH104 (a homolog of Arabidopsis bHLH104 in apple), which acts as a key component in regulating PM H+-ATPase-mediated rhizosphere acidification and Fe uptake in apples (Malus domestica), was identified as a direct target of MdSIZ1. MdSIZ1 directly sumoylated MdbHLH104 both in vitro and in vivo, especially under conditions of Fe deficiency, and this sumoylation was required for MdbHLH104 protein stability. Double substitution of K139R and K153R in MdbHLH104 blocked MdSIZ1-mediated sumoylation in vitro and in vivo, indicating that the K139 and K153 residues were the principal sites of SUMO conjugation. Moreover, the transcript level of the MdSIZ1 gene was substantially induced following Fe deficiency. MdSIZ1 overexpression exerted a positive influence on PM H+-ATPase-mediated rhizosphere acidification and Fe uptake. Our findings reveal an important role for sumoylation in the regulation of PM H+-ATPase-mediated rhizosphere acidification and Fe uptake during Fe deficiency in plants.
Insights
The SUMO E3 ligase MdSIZ1 stabilizes MdbHLH104 protein, enhancing iron uptake and rhizosphere acidification in apple plants under iron deficiency.
Area of Science:
- Plant Molecular Biology
- Plant Physiology
- Biochemistry
Background:
- Small ubiquitin-like modifier (SUMO) conjugation is crucial for plant abiotic stress responses.
- The role of SUMOylation in iron (Fe) deficiency tolerance in plants remains largely unexplored.
- Plasma membrane H+-ATPase is vital for Fe uptake and rhizosphere acidification.
Purpose of the Study:
- To investigate the role of the SUMO E3 ligase MdSIZ1 in iron deficiency response in apple (Malus domestica).
- To identify and characterize the interaction between MdSIZ1 and key regulators of Fe homeostasis.
- To elucidate the mechanism by which SUMOylation impacts Fe uptake and plant adaptation to Fe-deficient conditions.
Main Methods:
- Yeast two-hybrid assays and co-immunoprecipitation to identify protein interactions.
- In vitro and in vivo SUMOylation assays to confirm direct modification of MdbHLH104 by MdSIZ1.
- Gene expression analysis and overexpression studies in apple plants to assess functional significance.
Main Results:
- MdSIZ1 directly sumoylates the transcription factor MdbHLH104, enhancing its protein stability.
- Specific lysine residues (K139 and K153) on MdbHLH104 are identified as key SUMOylation sites.
- MdSIZ1 expression is induced by Fe deficiency, and its overexpression improves Fe uptake and rhizosphere acidification.
Conclusions:
- SUMOylation, mediated by MdSIZ1, plays a critical role in regulating Fe homeostasis in plants.
- The MdSIZ1-MdbHLH104 interaction is essential for maintaining Fe uptake and plant adaptation under Fe-limiting conditions.
- This study reveals a novel SUMOylation-dependent pathway controlling Fe deficiency responses in plants.
Related Concept Videos
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Glucose Homeostasis: Regulation of Blood Glucose
During fasting, when blood glucose levels are low, the pancreas secretes glucagon. it...
Enlargement of the Plasma Membrane
Plasma Membrane in Bacteria and Archaea
What is Homeostasis?
pH Homeostasis
Respiratory...

