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Modeling Spontaneous Metastatic Renal Cell Carcinoma mRCC in Mice Following Nephrectomy
Published on: April 29, 2014
Identification of eight key miRNAs associated with renal cell carcinoma: A meta-analysis
Guanghui Ying1, Ruilan Wu2, Min Xia1
1Department of Nephrology, Beilun District People's Hospital of Zhejiang Province, Ningbo, Zhejiang 315800, P.R. China.
Abstract:
Renal cell carcinoma (RCC) is the most common renal carcinoma in the human kidney. To date, to the best of our knowledge, there are no biomarkers for the early monitoring and diagnosis of RCC patients. The present study aimed to develop deeper insight into the molecular mechanisms of microRNAs (miRNAs/miRs) in the regulation of RCC development and to reveal candidate miRNA biomarkers in human RCC. A meta-analysis was used to integrate the published and independent RCC miRNA expression profiling investigations that compared the miRNA expression profiles in RCC samples with control samples. The meta-signature miRNA target genes were then predicted in TargetScan. The predicted targets were further analyzed using Gene Ontology and pathway enrichment analysis with the Database for Annotation, Visualization and Integrated Discovery online tool, and then the transcription factors of meta-signature miRNA target genes were identified in Tfacts. A total of 7 publicly available and independent RCC miRNA expression profiling datasets were collected, and 2 upregulated (hsa-miR-155-5p and hsa-miR-210-5p) and 6 downregulated (hsa-miR-138-5p, hsa-miR-141-5p, hsa-miR-200c-5p, hsa-miR-362-5p, hsa-miR-363-5p and hsa-miR-429) meta-signature miRNAs in renal carcinoma were identified. The targeted gene enrichment analysis indicated that the meta-signature miRNAs may influence several pathways that participate in cancerogenesis, including the 'rap1 signaling pathway', 'renal cell carcinoma' and 'microRNAs in cancer'. Overall, the present meta-analysis identified 2 upregulated and 6 downregulated meta-signature miRNAs from 7 renal carcinoma datasets, the dysregulated miRNAs that may contribute to kidney carcinoma development. This research may reveal candidate miRNA biomarkers in human RCC.
Insights
This study identified 8 microRNAs (miRNAs) dysregulated in renal cell carcinoma (RCC). These findings may lead to new biomarkers for early diagnosis and monitoring of kidney cancer.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Renal cell carcinoma (RCC) is the most common kidney cancer.
- Currently, no validated biomarkers exist for early RCC monitoring or diagnosis.
- MicroRNAs (miRNAs) play crucial roles in cancer development, but their specific involvement in RCC requires further elucidation.
Purpose of the Study:
- To investigate the molecular mechanisms of miRNAs in RCC development.
- To identify potential miRNA biomarkers for early detection and monitoring of human RCC.
- To gain deeper insights into miRNA regulation in renal carcinoma.
Main Methods:
- A meta-analysis was performed on 7 independent RCC miRNA expression profiling datasets.
- miRNA target genes were predicted using TargetScan.
- Gene Ontology and pathway enrichment analyses were conducted using DAVID.
- Transcription factors of target genes were identified using Tfacts.
Main Results:
- Eight meta-signature miRNAs were identified: 2 upregulated (hsa-miR-155-5p, hsa-miR-210-5p) and 6 downregulated (hsa-miR-138-5p, hsa-miR-141-5p, hsa-miR-200c-5p, hsa-miR-362-5p, hsa-miR-363-5p, hsa-miR-429).
- Enrichment analysis indicated these miRNAs influence cancer-related pathways like 'rap1 signaling pathway' and 'microRNAs in cancer'.
- Dysregulated miRNAs were found to potentially contribute to kidney carcinoma development.
Conclusions:
- This meta-analysis identified 8 key miRNAs (2 up, 6 down) in renal carcinoma.
- These dysregulated miRNAs are implicated in cancerogenesis and may serve as candidate biomarkers for RCC.
- Further research into these miRNAs could facilitate early diagnosis and monitoring of kidney cancer.
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