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An improved methodology to compute surface site interaction points using high density molecular electrostatic

Antoni Oliver1, Christopher A Hunter2, Rafel Prohens3

  • 1Department of Physics, University of the Balearic Islands, Cra. de Valldemossa, km 7.5, 07122, Spain.

Journal of Computational Chemistry
|October 24, 2018
PubMed
Summary
This summary is machine-generated.

Optimized Surface Site Interaction Points (SSIP) calculations using Molecular Electrostatic Potential Surfaces (MEPS) improve accuracy and speed. This method enhances virtual screening and free energy calculations in solid and liquid phases.

Keywords:
DFTHBAHBDMEPSSSIP,α,β

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Area of Science:

  • Computational Chemistry
  • Materials Science

Background:

  • Surface Site Interaction Points (SSIP) are crucial for understanding molecular interactions in condensed phases.
  • Previous SSIP calculations have shown success but require optimization for efficiency and precision.

Purpose of the Study:

  • To develop optimized methods for calculating SSIP using Molecular Electrostatic Potential Surfaces (MEPS).
  • To enhance the accuracy and speed of SSIP determination for improved computational chemistry applications.

Main Methods:

  • Utilized Density Functional Theory (DFT) with B3LYP/6-31*G basis set to compute MEPS.
  • Implemented optimizations based on correlating experimental H-bond parameters (α and β) with MEPS extremes across various electron density levels.
  • Performed parameterization as a function of atom types.

Main Results:

  • MEPS calculated at 0.01 au electron density level showed slightly improved correlation with experimental data compared to other density values.
  • The optimized method demonstrated significant improvements in the correlation between theoretical and experimental data.
  • The 0.01 au calculation is approximately six times faster than calculations at 0.002 au.

Conclusions:

  • The proposed methodology provides a fast and precise way to obtain SSIP.
  • Enhanced SSIP calculations can significantly improve applications such as virtual cocrystal screening, free energy calculations in solution, and molecular docking.