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Published on: December 28, 2021
An infrastructure for precision medicine through analysis of big data
Marco Moscatelli1, Andrea Manconi2, Mauro Pessina3
1Institute for Biomedical Technologies - National Research Council (CNR-ITB), via F.lli Cervi 93, Segrate, 20090, MI, Italy. marco.moscatelli@itb.cnr.it.
We developed an infrastructure to integrate diverse healthcare data for precision medicine. This system analyzes patient histories, enabling early disease detection and personalized treatment strategies.
Area of Science:
- Biomedical Informatics
- Computational Biology
- Precision Medicine
Background:
- Advancements in omics data and systems biology simulation drive precision medicine.
- Digitization of clinical records is crucial for collecting and aggregating heterogeneous healthcare data.
- Patient data sharing presents ethical, legal, and technological challenges.
Purpose of the Study:
- To present an infrastructure for integrating large volumes of heterogeneous biological data.
- To enable the extraction and aggregation of unstructured and semi-structured clinical data.
- To develop predictive models for biomedical purposes and support precision medicine.
Main Methods:
- Applied an infrastructure to integrate data from laboratory, pathological anatomy, and biopsy exams (2010-2016).
- Implemented algorithms for data security, privacy, and extraction of unstructured/semi-structured information.
- Developed three Bayesian classifiers to analyze free-text clinical examination reports.
Main Results:
- The infrastructure successfully integrated diverse clinical data sources.
- Algorithms enabled precise historical analysis of patient clinical activities.
- Bayesian classifiers demonstrated good accuracy in analyzing free-text data for disease presence and status.
Conclusions:
- The infrastructure facilitates the integration of anonymized, heterogeneous clinical data.
- Processed data supports historical analysis and statistical assessments for complex biomedical questions.
- This approach aids in predicting diseases and identifying early diagnostic markers for personalized medicine.
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