Related Experiment Video
Updated: Feb 3, 2026

Circulating MicroRNA Quantification Using DNA-binding Dye Chemistry and Droplet Digital PCR
Published on: June 26, 2016
Studying Chemistry in Micro-compartments by Separating Droplet Generation from Ionization
Michael I Jacobs1,2, Ryan D Davis3, Rebecca J Rapf2
1Department of Chemistry, University of California, Berkeley, CA, 94720, USA.
Reactions in tiny droplets can be faster, but electrospray ionization mass spectrometry (ESI-MS) may misattribute these enhancements to droplet chemistry when gas-phase reactions are dominant. Future studies need to differentiate droplet versus gas-phase effects.
Area of Science:
- Chemical Kinetics
- Physical Chemistry
- Analytical Chemistry
Background:
- Reactions within micron-sized compartments, like droplets, exhibit accelerated rates and altered mechanisms compared to bulk solutions.
- Electrospray ionization mass spectrometry (ESI-MS) is commonly used to study droplet reaction kinetics, but droplet charging and evaporation complicate analysis.
- Gas-phase ion-molecule and clustering reactions in ESI-MS can interfere with the interpretation of droplet-confined reactions.
Purpose of the Study:
- To decouple droplet generation from ionization to investigate the role of gas-phase chemistry in reaction acceleration.
- To compare the reactivity of sugar phosphate formation in droplets versus the gas phase.
- To assess the potential for gas-phase processes to complicate the interpretation of ESI-MS data for droplet reactions.
Main Methods:
- Separation of droplet generation from the ionization source.
- Utilizing electrospray ionization mass spectrometry (ESI-MS) for product ion detection.
- Measuring the formation of sugar phosphates from phosphoric acid and simple sugars.
Main Results:
- The same product ions previously attributed to in-droplet reactions were observed both with and without compartmentalization.
- Gas-phase processes occurring in the ionization region can significantly complicate the quantification and interpretation of accelerated droplet reactions.
- Gas-phase reactions were demonstrated to be a significant, potentially dominant, pathway for sugar phosphate formation.
Conclusions:
- Gas-phase reactions can be a major contributor to observed rate accelerations in ESI-MS studies of droplet chemistry.
- The interpretation of accelerated reactions in droplets using ESI-MS may require careful consideration of non-droplet-related processes.
- Future research should incorporate methods to distinguish between in-droplet and gas-phase reaction contributions.
Related Concept Videos
Ionization Energy
Chemistry of the Cell
Water
The polarity of the water molecule and its resulting hydrogen bonding makes water a unique substance with special properties that are intimately tied to the processes of life. Life originally evolved in an aqueous environment, and most of an organism’s cellular chemistry and metabolism occur inside the aqueous contents of the cell’s cytoplasm. Special properties of water are its high heat capacity...
Chemistry of the Cell
Compartment Models: Two-Compartment Model
Compartment Models: Single-Compartment Model
Three-Compartment Open Model

