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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
A RAD51 assay feasible in routine tumor samples calls PARP inhibitor response beyond BRCA mutation
Marta Castroviejo-Bermejo1, Cristina Cruz1,2,3, Alba Llop-Guevara1
1Experimental Therapeutics Group, Vall d'Hebron Institute of Oncology, Barcelona, Spain.
Abstract:
Poly(ADP-ribose) polymerase (PARP) inhibitors (PARPi) are effective in cancers with defective homologous recombination DNA repair (HRR), including BRCA1/2-related cancers. A test to identify additional HRR-deficient tumors will help to extend their use in new indications. We evaluated the activity of the PARPi olaparib in patient-derived tumor xenografts (PDXs) from breast cancer (BC) patients and investigated mechanisms of sensitivity through exome sequencing, BRCA1 promoter methylation analysis, and immunostaining of HRR proteins, including RAD51 nuclear foci. In an independent BC PDX panel, the predictive capacity of the RAD51 score and the homologous recombination deficiency (HRD) score were compared. To examine the clinical feasibility of the RAD51 assay, we scored archival breast tumor samples, including PALB2-related hereditary cancers. The RAD51 score was highly discriminative of PARPi sensitivity versus PARPi resistance in BC PDXs and outperformed the genomic test. In clinical samples, all PALB2-related tumors were classified as HRR-deficient by the RAD51 score. The functional biomarker RAD51 enables the identification of PARPi-sensitive BC and broadens the population who may benefit from this therapy beyond BRCA1/2-related cancers.
Insights
A new RAD51 score accurately identifies homologous recombination deficiency (HRD) in breast cancer (BC) patients, predicting sensitivity to Poly(ADP-ribose) polymerase inhibitors (PARPi). This functional biomarker expands PARPi therapy beyond BRCA1/2 mutations.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Poly(ADP-ribose) polymerase inhibitors (PARPi) show efficacy in cancers with homologous recombination DNA repair (HRR) defects, notably BRCA1/2-mutated tumors.
- Identifying additional HRR-deficient tumors is crucial for expanding PARPi therapeutic applications.
- Current predictive tests may not fully capture functional HRR deficiency across diverse cancer types.
Purpose of the Study:
- To evaluate the efficacy of the PARPi olaparib in patient-derived breast cancer xenografts (PDXs).
- To investigate mechanisms of PARPi sensitivity and resistance.
- To assess the predictive capacity of a RAD51-based biomarker compared to genomic tests for identifying HRR-deficient tumors.
Main Methods:
- Utilized patient-derived tumor xenografts (PDXs) from breast cancer patients.
- Conducted exome sequencing, BRCA1 promoter methylation analysis, and RAD51 immunostaining.
- Compared RAD51 and homologous recombination deficiency (HRD) scores in independent PDX panels and clinical samples.
Main Results:
- The RAD51 score effectively distinguished PARPi sensitivity from resistance in breast cancer PDXs.
- RAD51 scoring outperformed genomic tests in predicting PARPi response.
- All tested PALB2-related hereditary breast cancer samples were classified as HRR-deficient using the RAD51 score.
Conclusions:
- The functional RAD51 biomarker accurately identifies PARPi-sensitive breast cancer.
- This assay broadens the eligible patient population for PARPi therapy beyond those with BRCA1/2 mutations.
- RAD51 immunostaining offers a feasible method for identifying HRR deficiency in clinical settings.
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