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Updated: Feb 2, 2026

Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq
Published on: November 13, 2017
Loss of G9a preserves mutation patterns but increases chromatin accessibility, genomic instability and aggressiveness
Alexandra Avgustinova1, Aikaterini Symeonidi2, Andrés Castellanos2
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain. alexandra.avgustinova@irbbarcelona.org.
Abstract:
Mutations in, and the altered expression of, epigenetic modifiers are pervasive in human tumours, making epigenetic factors attractive antitumour targets. The open-versus-closed chromatin state within the cells-of-origin of cancer correlates with the uneven distribution of mutations. However, the long-term effect of targeting epigenetic modifiers on mutability in patients with cancer is unclear. Here, we increased chromatin accessibility by deleting the histone H3 lysine 9 (H3K9) methyltransferase G9a in murine epidermis and show that this does not alter the single nucleotide variant burden or global genomic distribution in chemical mutagen-induced squamous tumours. G9a-depleted tumours develop after a prolonged latency compared with their wild-type counterparts, but are more aggressive and have an expanded cancer progenitor pool, pronounced genomic instability and frequent loss-of-function p53 mutations. Thus, we call for caution when assessing long-term therapeutic benefits of chromatin modifier inhibitors, which may promote more aggressive disease.
Insights
Targeting epigenetic modifiers like G9a in cancer may not increase mutations but can lead to more aggressive tumors with genomic instability. Caution is advised for long-term therapeutic benefits of these chromatin modifier inhibitors.
Area of Science:
- Epigenetics
- Cancer Biology
- Genomics
Background:
- Epigenetic modifiers are frequently altered in human cancers, presenting potential therapeutic targets.
- Chromatin accessibility in cancer cells-of-origin correlates with mutation patterns, but long-term effects of targeting epigenetic modifiers on cancer mutability remain unclear.
Purpose of the Study:
- To investigate the long-term impact of targeting the histone H3 lysine 9 (H3K9) methyltransferase G9a on mutability and tumor progression in a murine cancer model.
Main Methods:
- Increased chromatin accessibility by deleting G9a in murine epidermis.
- Induced squamous tumors using chemical mutagens.
- Analyzed single nucleotide variant burden, global genomic distribution, tumor latency, aggressiveness, cancer progenitor pool, genomic instability, and p53 mutations.
Main Results:
- Deleting G9a did not alter the single nucleotide variant burden or global genomic distribution in chemically induced squamous tumors.
- G9a-depleted tumors exhibited prolonged latency but were more aggressive.
- These tumors showed an expanded cancer progenitor pool, pronounced genomic instability, and frequent loss-of-function p53 mutations.
Conclusions:
- Targeting epigenetic modifiers like G9a may not increase mutability but can promote more aggressive cancer phenotypes.
- Therapeutic strategies inhibiting chromatin modifiers require careful assessment for potential long-term adverse effects, such as promoting aggressive disease and genomic instability.
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