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Postconditioning with Lactate-enriched Blood for Cardioprotection in ST-segment Elevation Myocardial Infarction
Published on: May 28, 2019
Identification of potentially critical genes in the development of heart failure after ST-segment elevation
Cheng Qian1, Danqi Chang1, Hang Li1
1Department of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan University, Wuhan, China.
Insights
Critical genes like CXCL8 and THBS1 are linked to heart failure (HF) after ST-segment elevation myocardial infarction (STEMI). Their expression levels change dynamically post-STEMI, offering insights into HF development.
Area of Science:
- Cardiology
- Genomics
- Bioinformatics
Background:
- Heart failure (HF) is a frequent complication following acute ST-segment elevation myocardial infarction (STEMI).
- Identifying genetic factors influencing post-STEMI HF is crucial for understanding disease mechanisms.
Purpose of the Study:
- To identify critical genes associated with HF development in STEMI patients.
- To analyze the expression dynamics of key genes during HF progression.
Main Methods:
- Bioinformatics analysis of microarray data (GSE59867) from STEMI patients with and without HF.
- Differential gene expression analysis using LIMMA.
- Functional enrichment and pathway analysis.
- Protein-protein interaction (PPI) network construction and hub gene identification.
Main Results:
- 58 upregulated and 75 downregulated differentially expressed genes (DEGs) were identified.
- DEGs were enriched in inflammatory response, extracellular matrix organization, and immune response pathways.
- CXCL8, THBS1, FOS, and ITGA2B were identified as key hub genes in the PPI network.
- Hub gene mRNA levels were elevated within 30 days post-STEMI but normalized by 6 months.
Conclusions:
- CXCL8, THBS1, FOS, and ITGA2B are implicated as critical genes in the development of HF post-STEMI.
- The dynamic expression pattern of these genes suggests their involvement in early post-infarct cardiac remodeling.
- These findings provide potential targets for further research into HF prevention and treatment after STEMI.
Abstract:
Heart failure (HF) remains a common complication after acute ST-segment elevation myocardial infarction (STEMI). Here, we aim to identify critical genes related to the developed HF in patients with STEMI using bioinformatics analysis. The microarray data of GSE59867, including peripheral blood samples from nine patients with post-infarct HF and eight patients without post-infarct HF, were downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) between HF and non-HF groups were screened by LIMMA package. Functional enrichment analyses of DEGs were conducted, followed by construction of a protein-protein interaction (PPI) network. The dynamic messenger RNA (mRNA) level of the hub genes during the follow-up was analyzed to further elucidate their role in HF development. A total of 58 upregulated and 75 downregulated DEGs were screen out. They were mainly enriched in biological processes about inflammatory response, extracellular matrix organization, response to cAMP, immune response, and positive regulation of cytosolic calcium ion concentration. Pathway analysis revealed that the DEGs were also involved in hematopoietic cell lineage, pathways in cancer, and extracellular matrix-receptor interaction. In the PPI network consisting of 58 nodes and 72 interactions, CXCL8 (degree = 15), THBS1 (degree = 8), FOS (degree = 7), and ITGA2B (degree = 6) were identified as the hub genes. In the comparison of patients with and without post-infarct HF, the mRNA level of these hub genes were all higher within 30 days but reached similar at 6 months after STEMI. In conclusion, CXCL8, THBS1, FOS, and ITGA2B may play important roles in the development of HF after acute STEMI.
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