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Updated: Feb 1, 2026

Ultra-long Read Sequencing for Whole Genomic DNA Analysis
Published on: March 15, 2019
Views from the clinic: Healthcare provider perspectives on whole genome sequencing in paediatrics
M J Szego1, M S Meyn2, C Shuman3
1Joint Centre for Bioethics, University of Toronto, Toronto, Canada; St. Michael's Hospital, Toronto, Canada; Department of Family and Community Medicine, University of Toronto, Toronto, Canada; Dalla Lana School of Public Health, University of Toronto, Canada; The Centre for Applied Genomics, The Hospital for Sick Children, Toronto, Canada.
Insights
Whole genome sequencing (WGS) offers improved diagnostics, but practical challenges exist. Healthcare providers
Area of Science:
- Genomics
- Paediatric Medicine
- Healthcare Delivery
Background:
- Whole genome sequencing (WGS) is a powerful diagnostic tool with potential for personalized medicine.
- Implementing WGS, especially in paediatrics, presents practical and ethical complexities.
- Understanding healthcare providers' perspectives is crucial for successful WGS integration.
Purpose of the Study:
- To explore healthcare providers' experiences and perceptions of WGS opportunities and challenges in a paediatric setting.
- To identify factors influencing the adoption and implementation of WGS in paediatric care.
Main Methods:
- Qualitative study involving semi-structured interviews with healthcare providers at a major Canadian paediatric academic health science centre.
- Participants included 14 genetics professionals (geneticists, genetic counsellors) and 15 non-genetics professionals (sub-specialists, nurses).
- Thematic analysis of interview transcripts to identify key themes and perspectives.
Main Results:
- Genetics professionals demonstrated higher confidence in ordering genetic tests and providing counselling compared to non-genetics professionals.
- WGS was generally supported when more specific tests were unavailable or unlikely to yield a diagnosis.
- Concerns varied: genetics professionals cited time demands for variant review, while non-genetics professionals highlighted knowledge and training gaps. Reporting of secondary findings also raised ethical considerations.
Conclusions:
- Healthcare providers' diverse perspectives on WGS, including practical and ethical considerations, are essential for guiding its implementation in paediatrics.
- Addressing concerns related to time, knowledge, training, and secondary findings reporting is critical for successful WGS integration.
- Further research and targeted educational initiatives can facilitate the effective and responsible use of WGS in paediatric healthcare.
Abstract:
Whole genome sequencing (WGS) is a transformative technology which promises improved diagnostic rates compared to conventional genetic testing strategies and tailored approaches to patient care. Due to the practical and ethical complexities associated with using WGS, particularly in the paediatric context, input from a broad spectrum of healthcare providers can guide implementation strategies. We recruited healthcare providers from the largest paediatric academic health science centre in Canada and conducted semi-structured qualitative interviews, exploring experiences with and perceptions of the opportunities and challenges associated with WGS. Interview transcripts were coded and analyzed thematically. Interviews were completed with 14 genetics professionals (geneticists and genetic counsellors) and 15 non-genetics professionals (physician sub-specialists and nurses). Genetics professionals ordered genetic tests more often and reported greater confidence on pre- and post-test genetic counselling compared to non-genetics professionals. Most healthcare providers endorsed WGS when a more specific test was either not available or not likely to yield a diagnosis. While genetics professionals raised concerns regarding the time demands associated with reviewing WGS variants, non-genetics professionals reflected concerns about knowledge and training. Providers' position on reporting secondary variants to parents drew upon but was not limited to the concept of best interests. Taken together, understanding practical and principled matters of WGS from healthcare providers' perspectives can guide ongoing efforts to implement WGS in paediatrics.
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