Related Experiment Video
Updated: Feb 1, 2026

05:55
Modeling the Functional Network for Spatial Navigation in the Human Brain
Published on: October 13, 2023
1.6K
Navigating methane metabolism: Enzymes, compartments, and networks.
David A Collins1, Marina G Kalyuzhnaya1
1Department of Biology, San Diego State University, San Diego, CA, United States.
Methods in Enzymology
|December 5, 2018
Summary
Microbial methane oxidation is vital for the carbon cycle. This chapter details experimental methods for studying methane-consuming bacteria and their unique enzymes, aiming to overcome challenges in engineering new methane-utilizing organisms.
Area of Science:
- Microbiology
- Biochemistry
- Environmental Science
Background:
- Microbial methane utilization is a critical process in the global carbon cycle, mitigating atmospheric methane emissions.
- Methane oxidation is performed by a diverse range of microbes, yet relies on a limited set of unique enzymes.
- Heterologous expression of methane oxidation pathways in non-methanotrophic hosts has faced significant challenges.
Purpose of the Study:
- To provide a comprehensive overview of experimental techniques for working with native methanotrophic bacteria.
- To address the challenges in understanding and engineering methane utilization pathways.
- To facilitate research into the biochemical and genetic aspects of microbial methane consumption.
Main Methods:
- Cultivation strategies for methanotrophic bacteria.
- Laboratory-scale bioreactor setups for controlled growth.
- Genetic manipulation techniques for altering methanotrophs.
- Imaging and omics-level approaches for cellular and metabolic analysis.
Main Results:
- Highlights experimental difficulties and successes in heterologous expression of methane oxidation traits.
- Identifies key challenges in enzyme structure, compartmentalization, and metabolic regulation.
- Emphasizes the need for deeper understanding of native methanotrophic systems.
Conclusions:
- Successful engineering of methane utilization requires a thorough understanding of native methanotrophs.
- Advanced experimental methodologies are crucial for dissecting methanotrophic metabolism.
- This work provides foundational knowledge for future synthetic biology applications in methane conversion.
Related Concept Videos
Enzymes
94.7K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
94.7K
What is Metabolism?
131.8K
Overview
131.8K
Protein Networks
4.5K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.5K
Compartment Models: Two-Compartment Model
7.1K
The two-compartment model divides the body into central and peripheral compartments to account for varying blood perfusion rates among organs and tissues, affecting drug distribution. The central compartment includes blood and highly perfused tissues with rapid drug distribution, while the peripheral compartment contains tissues with slower drug distribution. After a single IV bolus dose, the drug concentration is high in plasma and low in tissues. The drug distribution between compartments...
7.1K
Enzyme Kinetics
104.1K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
104.1K
Compartment Models: Single-Compartment Model
3.2K
The single-compartment model serves as a simplified representation of the human body. This model assumes that the body functions as a single, well-mixed open compartment. When a drug is administered intravenously, it enters the body and quickly distributes uniformly. The drug then undergoes biotransformation and elimination, ultimately leaving the body. The volume of this compartment is referred to as the apparent volume of distribution into which the drug can uniformly distribute. In this...
3.2K

