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Updated: Feb 1, 2026

Prediction of HIV-1 Coreceptor Usage Tropism by Sequence Analysis using a Genotypic Approach
Published on: December 1, 2011
Structural basis of coreceptor recognition by HIV-1 envelope spike
Md Munan Shaik1,2, Hanqin Peng1, Jianming Lu3,4
1Division of Molecular Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
The HIV-1 envelope glycoprotein (Env) structure reveals how the CCR5 coreceptor binding destabilizes gp41, initiating viral fusion. This finding clarifies HIV entry mechanisms and aids therapeutic development.
Area of Science:
- Structural Biology
- Virology
- Immunology
Background:
- HIV-1 entry relies on envelope glycoprotein (Env) interaction with CD4 and coreceptors like CCR5.
- The gp120-coreceptor binding is critical for triggering viral fusion via gp41.
- Understanding this interaction is key for developing HIV therapies and vaccines.
Purpose of the Study:
- To determine the high-resolution structure of HIV-1 gp120 in complex with CD4 and CCR5.
- To elucidate the molecular mechanism by which CCR5 binding initiates viral fusion.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to obtain a 3.9 Å resolution structure.
- The study analyzed the interaction between full-length gp120, soluble CD4, and unmodified human CCR5.
Main Results:
- The V3 loop of gp120 inserts into the CCR5 chemokine-binding pocket.
- CCR5 binding does not cause allosteric changes in gp120 but brings Env closer to the target membrane.
- The N terminus of gp120 flips, potentially destabilizing gp41 and initiating fusion.
Conclusions:
- CCR5 acts as a stabilizing anchor for the CD4-bound Env conformation near the cell membrane.
- The findings provide crucial insights into the HIV-1 entry pathway.
- This structural understanding may inform the design of novel HIV vaccines and therapeutics.
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07:29Determination of Molecular Structures of HIV Envelope Glycoproteins using Cryo-Electron Tomography and Automated Sub-tomogram Averaging
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