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Updated: Feb 1, 2026

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long non-coding RNA LOC285194 functions as a tumor suppressor by targeting p53 in non-small cell lung cancer
Huaping Zhou1, Allen Chen2, Jianfei Shen3
1Southern Medical University, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong 510515, P.R. China.
Abstract:
Recently, LOC285194 has shown a potential tumor-suppressor function in several types of human cancers, but its function in non-small cell lung cancer (NSCLC) remains unknown. This study intended to investigate the biological role of LOC285194 and its clinical significance in NSCLC. LOC285194 was detected by qRT-PCR, and its correlation with clinicopathological features of NSCLC was analyzed. The expression of LOC285194 was knocked down or ectopically expressed in lung cancer cells (A549 and H1299) and tumor cell growth, migration and invasion in vitro were investigated. In addition, the interaction of LOC285194 and target proteins was assessed by RNA pulldown and RNA immunoprecipitation in vitro. The results revealed that the expression of LOC285194 was significantly lower in tumor tissues when compared with the corresponding non-tumor tissues (P<0.001). Its expression was correlated with the tumor size (P=0.027). Kaplan-Meier analysis revealed that patients with lower LOC285194 expression had worse disease-free survival and overall survival rates (P<0.05). RNA protein interaction analysis revealed that p53 was the direct binding target of LOC285194 in NSCLC. Bioinformatics analyses suggested that depletion of LOC285149 could affect its antitumor function through the KRAS/BRAF/SMEK pathway. Our findings indicated that LOC285194 was a novel non-coding prognostic indicator and contributed to tumor suppression by targeting p53 in NSCLC, suggesting that it may be a non-coding target for NSCLC gene therapy.
Insights
LOC285194 functions as a tumor suppressor in non-small cell lung cancer (NSCLC). Lower LOC285194 expression correlates with poor survival and targets p53, suggesting its potential in NSCLC gene therapy.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The tumor-suppressor role of LOC285194 is established in various cancers, but its function in non-small cell lung cancer (NSCLC) is uncharacterized.
- Understanding the role of non-coding RNAs like LOC285194 is crucial for developing novel cancer therapies.
Purpose of the Study:
- To investigate the biological function and clinical significance of LOC285194 in non-small cell lung cancer (NSCLC).
- To explore LOC285194's potential as a prognostic indicator and therapeutic target in NSCLC.
Main Methods:
- Quantitative real-time PCR (qRT-PCR) to measure LOC285194 expression in NSCLC tissues.
- In vitro studies involving gene knockdown and overexpression in lung cancer cell lines (A549, H1299) to assess effects on cell growth, migration, and invasion.
- RNA pulldown and RNA immunoprecipitation assays to identify direct protein binding partners of LOC285194.
Main Results:
- LOC285194 expression was significantly downregulated in NSCLC tumor tissues compared to non-tumor tissues (P<0.001) and correlated with tumor size (P=0.027).
- Reduced LOC285194 expression was associated with worse disease-free and overall survival rates in NSCLC patients (P<0.05).
- p53 was identified as a direct binding target of LOC285194, and bioinformatics analysis suggested involvement in the KRAS/BRAF/MEK pathway.
Conclusions:
- LOC285194 acts as a novel non-coding tumor suppressor in NSCLC by targeting p53.
- Its expression level serves as a prognostic indicator for NSCLC patients.
- LOC285194 holds potential as a therapeutic target for gene therapy in NSCLC.
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