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U-Net: deep learning for cell counting, detection, and morphometry
Thorsten Falk1,2,3, Dominic Mai1,2,4,5, Robert Bensch1,2,6
1Department of Computer Science, Albert-Ludwigs-University, Freiburg, Germany.
Abstract:
U-Net is a generic deep-learning solution for frequently occurring quantification tasks such as cell detection and shape measurements in biomedical image data. We present an ImageJ plugin that enables non-machine-learning experts to analyze their data with U-Net on either a local computer or a remote server/cloud service. The plugin comes with pretrained models for single-cell segmentation and allows for U-Net to be adapted to new tasks on the basis of a few annotated samples.
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