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Updated: Jan 31, 2026

Protocol for Studying Extinction of Conditioned Fear in Naturally Cycling Female Rats
Published on: February 23, 2015
Coordination between Prefrontal Cortex Clock Gene Expression and Corticosterone Contributes to Enhanced Conditioned
Elizabeth R Woodruff1, Lauren E Chun1, Laura R Hinds1
1Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO 80309.
Nighttime fear extinction learning in rats depends on ventromedial prefrontal cortex clock genes and corticosterone. Manipulating these factors may improve post-traumatic stress disorder treatments.
Area of Science:
- Neuroscience
- Chronobiology
- Behavioral Science
Background:
- Post-traumatic stress disorder (PTSD) is linked to impaired fear extinction and dysregulation of the ventromedial prefrontal cortex (vmPFC), circadian rhythms, and glucocorticoids.
- The vmPFC exhibits rhythmic clock gene expression, suggesting intrinsic circadian clock function influenced by corticosterone (CORT).
Purpose of the Study:
- To investigate the role of vmPFC clock gene expression and its interaction with CORT in auditory conditioned fear extinction learning.
- To determine if diurnal variations and CORT influence fear extinction recall.
Main Methods:
- Male rats were trained and tested during their active (night) or inactive (day) phases.
- vmPFC clock gene expression (Per1, Per2) was reduced using viral vectors.
- Circulating CORT levels were altered via adrenalectomy (ADX) with or without CORT replacement.
Main Results:
- Rats trained and tested at night showed superior fear extinction recall, which was impaired by vmPFC clock gene knockdown.
- Nighttime extinction recall was absent in ADX rats but restored with diurnal CORT and acute post-training CORT elevation.
- Fear extinction learning and recall are regulated diurnally.
Conclusions:
- Effective conditioned fear extinction requires intact vmPFC clock gene function and a combination of circadian and training-associated CORT.
- Targeting these mechanisms may enhance therapeutic outcomes for PTSD and related conditions.
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