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Development of New Tools to Detect Colistin-Resistance among Enterobacteriaceae Strains
Lucie Bardet1, Jean-Marc Rolain1
1Aix-Marseille Université, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France.
Abstract:
The recent discovery of the plasmid-mediated mcr-1 gene conferring resistance to colistin is of clinical concern. The worldwide screening of this resistance mechanism among samples of different origins has highlighted the urgent need to improve the detection of colistin-resistant isolates in clinical microbiology laboratories. Currently, phenotypic methods used to detect colistin resistance are not necessarily suitable as the main characteristic of the mcr genes is the low level of resistance that they confer, close to the clinical breakpoint recommended jointly by the CLSI and EUCAST expert systems (S ≤ 2 mg/L and R > 2 mg/L). In this context, susceptibility testing recommendations for polymyxins have evolved and are becoming difficult to implement in routine laboratory work. The large number of mechanisms and genes involved in colistin resistance limits the access to rapid detection by molecular biology. It is therefore necessary to implement well-defined protocols using specific tools to detect all colistin-resistant bacteria. This review aims to summarize the current clinical microbiology diagnosis techniques and their ability to detect all colistin resistance mechanisms and describe new tools specifically developed to assess plasmid-mediated colistin resistance. Phenotyping, susceptibility testing, and genotyping methods are presented, including an update on recent studies related to the development of specific techniques.
Insights
The plasmid-mediated mcr-1 gene causes colistin resistance, necessitating improved detection methods in clinical labs. This review covers current and new tools for identifying all colistin-resistant bacteria.
Area of Science:
- Microbiology
- Clinical Diagnostics
- Antimicrobial Resistance
Background:
- The emergence of plasmid-mediated colistin resistance (mcr-1 gene) poses a significant clinical challenge.
- Current phenotypic methods struggle to reliably detect low-level colistin resistance near clinical breakpoints.
- Evolving susceptibility testing recommendations for polymyxins complicate routine laboratory implementation.
Purpose of the Study:
- To review current clinical microbiology diagnostic techniques for colistin resistance.
- To evaluate the ability of existing methods to detect diverse colistin resistance mechanisms.
- To describe novel tools developed for detecting plasmid-mediated colistin resistance.
Main Methods:
- Review of current literature on colistin resistance detection.
- Analysis of phenotypic, susceptibility testing, and genotyping methods.
- Inclusion of recent studies on specific colistin resistance detection techniques.
Main Results:
- Phenotypic methods often lack sensitivity for low-level resistance conferred by mcr genes.
- The diversity of resistance mechanisms complicates rapid molecular detection.
- Specific tools are being developed to address the challenge of detecting plasmid-mediated colistin resistance.
Conclusions:
- Accurate and comprehensive detection of colistin resistance is crucial for patient care.
- Well-defined protocols and specific tools are needed to identify all colistin-resistant bacteria.
- Ongoing research focuses on developing sensitive and specific diagnostic approaches for emerging resistance mechanisms.
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