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Updated: Jan 30, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
Published on: April 29, 2010
Advances in understanding DNA processing and protection at stalled replication forks
Kimberly Rickman1, Agata Smogorzewska2
1Laboratory of Genome Maintenance, The Rockefeller University, New York, NY.
Abstract:
The replisome, the molecular machine dedicated to copying DNA, encounters a variety of obstacles during S phase. Without a proper response to this replication stress, the genome becomes unstable, leading to disease, including cancer. The immediate response is localized to the stalled replisome and includes protection of the nascent DNA. A number of recent studies have provided insight into the factors recruited to and responsible for protecting stalled replication forks. In response to replication stress, the SNF2 family of DNA translocases has emerged as being responsible for remodeling replication forks in vivo. The protection of stalled replication forks requires the cooperation of RAD51, BRCA1, BRCA2, and many other DNA damage response proteins. In the absence of these fork protection factors, fork remodeling renders them vulnerable to degradation by nucleases and helicases, ultimately compromising genome integrity. In this review, we focus on the recent progress in understanding the protection, processing, and remodeling of stalled replication forks in mammalian cells.
Insights
Replication stress during DNA copying can cause genome instability and cancer. This review details how stalled replication forks are protected and remodeled in mammalian cells to maintain genome integrity.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- The replisome, crucial for DNA replication, faces obstacles during S phase, leading to replication stress.
- Replication stress, if unaddressed, results in genomic instability and diseases like cancer.
- Understanding the mechanisms protecting stalled replication forks is vital for genome integrity.
Purpose of the Study:
- To review recent advancements in understanding the protection, processing, and remodeling of stalled replication forks.
- To highlight the roles of specific proteins and pathways involved in responding to replication stress.
- To emphasize the importance of these processes in preventing genomic instability.
Main Methods:
- This review synthesizes findings from recent studies on replication fork dynamics.
- It focuses on molecular mechanisms and protein interactions at stalled replication forks.
- The review examines data from mammalian cell systems.
Main Results:
- SNF2 family DNA translocases are key in remodeling replication forks under stress.
- RAD51, BRCA1, and BRCA2 are essential for protecting stalled forks.
- Failure in fork protection leads to degradation by nucleases/helicases, compromising genome integrity.
Conclusions:
- Coordinated action of DNA damage response proteins is critical for stalled fork protection.
- Proper remodeling and protection of replication forks are essential for maintaining genome stability.
- Further research into these mechanisms can inform cancer therapies.
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