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Updated: Jan 30, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Ingrid Ehrmann1, James H Crichton2, Matthew R Gazzara3,4
1Institute of Genetic Medicine, Newcastle University, Newcastle, United Kingdom.
Abstract:
Male germ cells of all placental mammals express an ancient nuclear RNA binding protein of unknown function called RBMXL2. Here we find that deletion of the retrogene encoding RBMXL2 blocks spermatogenesis. Transcriptome analyses of age-matched deletion mice show that RBMXL2 controls splicing patterns during meiosis. In particular, RBMXL2 represses the selection of aberrant splice sites and the insertion of cryptic and premature terminal exons. Our data suggest a Rbmxl2 retrogene has been conserved across mammals as part of a splicing control mechanism that is fundamentally important to germ cell biology. We propose that this mechanism is essential to meiosis because it buffers the high ambient concentrations of splicing activators, thereby preventing poisoning of key transcripts and disruption to gene expression by aberrant splice site selection.
Insights
Deletion of the RBMXL2 gene blocks male germ cell development by disrupting RNA splicing during meiosis. This ancient protein is crucial for preventing errors in gene expression, ensuring successful spermatogenesis.
Area of Science:
- Reproductive Biology
- Molecular Biology
- Genetics
Background:
- RBMXL2 is an ancient nuclear RNA binding protein found in male germ cells of placental mammals.
- Its function has remained largely unknown despite its conserved presence.
Purpose of the Study:
- To investigate the function of RBMXL2 in male germ cell development.
- To determine the role of RBMXL2 in regulating gene expression and splicing during meiosis.
Main Methods:
- Generation and analysis of RBMXL2 deletion mice.
- Transcriptome analysis (RNA sequencing) of germ cells from wild-type and RBMXL2-deficient mice.
- Splicing pattern analysis to identify aberrant splicing events.
Main Results:
- Deletion of the RBMXL2 gene completely blocks spermatogenesis.
- RBMXL2 is essential for controlling RNA splicing patterns during male meiosis.
- RBMXL2 actively represses the use of aberrant splice sites, including cryptic and premature terminal exons.
Conclusions:
- The RBMXL2 retrogene plays a critical, conserved role in mammalian germ cell biology.
- RBMXL2 functions as a splicing regulator, preventing gene expression disruption during meiosis.
- This mechanism is vital for meiosis, potentially by buffering splicing activators and preventing aberrant splice site selection.
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