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Updated: Jan 30, 2026

Novel Passive Clearing Methods for the Rapid Production of Optical Transparency in Whole CNS Tissue
Published on: May 8, 2018
Rapid optical tissue clearing using poly(acrylamide-co-styrenesulfonate) hydrogels for three-dimensional imaging.
Yuta Ono1, Ikuhiko Nakase2, Akikazu Matsumoto1
1Department of Applied Chemistry, Graduate School of Engineering, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531, Japan.
This study introduces a new poly(acrylamide-co-styrenesulfonate) hydrogel for passive CLARITY optical tissue clearing. This improved method enhances 3D fluorescence imaging of DNA in cleared tissues.
Area of Science:
- Biomaterials Science
- Optical Imaging
- Histology
Background:
- Optical tissue clearing enables 3D imaging of intact tissues.
- The CLARITY (clear lipid-exchanged acrylamide-hybridized rigid imaging/immunostaining/in situ-hybridization-compatible tissue-hydrogel) method uses polyacrylamide gels.
- Passive CLARITY methods require efficient hydrogel clearing agents.
Purpose of the Study:
- To develop and evaluate poly(acrylamide-co-styrenesulfonate) hydrogels for passive CLARITY.
- To optimize hydrogel composition for reduced clearing time and improved imaging.
- To demonstrate the utility of the new hydrogel for 3D fluorescence imaging of DNA.
Main Methods:
- Radical copolymerization of acrylamide (AAm) and sodium p-styrenesulfonate (SS) at varying ratios.
- Characterization of poly(AAm-co-SS) hydrogel properties (molecular weight, refractive index, swelling).
- Application of the hydrogels in passive CLARITY for tissue clearing and subsequent 3D fluorescence DNA staining.
Main Results:
- Copolymer composition and properties were controlled by monomer ratio.
- Increased SS content led to lower molecular weight, slightly higher refractive index, and increased swelling.
- Hydrogels with higher SS content reduced tissue clearing time.
- Successful 3D fluorescence imaging of DNA in cleared tissues was achieved.
Conclusions:
- Poly(AAm-co-SS) hydrogels enhance the passive CLARITY clearing process.
- The developed hydrogel is effective for 3D fluorescence imaging of DNA.
- This technique offers an improved approach for optical tissue clearing and bioimaging.
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