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Detecting Virus and Salivary Proteins of a Leafhopper Vector in the Plant Host
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High Throughput Sequencing For Plant Virus Detection and Discovery.

D E V Villamor1, T Ho1, M Al Rwahnih2

  • 11 Department of Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR 72701.

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|February 26, 2019
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Summary

High throughput sequencing (HTS) has revealed numerous plant viruses, advancing our understanding of viromes. Critical use of HTS aids in establishing virus-disease causality and resolving international disputes over plant material movement.

Keywords:
certificationclean plantdisease control and pest managementetiologyhigh throughput sequencingtechniquesvirologyvirus detection pipelinesvirus discovery

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Area of Science:

  • Virology
  • Plant Pathology
  • Bioinformatics

Background:

  • High throughput sequencing (HTS) has led to the discovery of numerous novel viruses, significantly expanding knowledge of natural viromes, especially in agricultural crops.
  • Despite advances, understanding the specific role of newly discovered viruses in causing plant diseases remains a significant challenge.
  • Globalization increases the risk of plant material movement, necessitating reliable methods for virus detection and dispute resolution.

Purpose of the Study:

  • To describe the process of plant virus detection and discovery using HTS data.
  • To provide a summary of available HTS data analysis pipelines for plant virus research.
  • To highlight the critical application of HTS in etiological studies for establishing disease causality.

Main Methods:

  • Utilizing high throughput sequencing (HTS) for comprehensive viral detection in plant samples.
  • Reviewing and summarizing existing bioinformatics pipelines designed for plant virus discovery from HTS data.
  • Applying HTS critically in etiological studies to link specific viruses with observed plant diseases.

Main Results:

  • HTS has proven instrumental in identifying a vast number of previously unknown viruses across various plant species.
  • The critical application of HTS facilitates the establishment of causal relationships between viruses and plant diseases.
  • A common methodological backbone exists across various pipelines for plant virus discovery from HTS data.

Conclusions:

  • High throughput sequencing is a powerful tool for advancing plant virology, revealing viral diversity and aiding in disease diagnostics.
  • Careful application of HTS is crucial for confirming virus-induced plant diseases and understanding their biological roles.
  • Standardized approaches to HTS data analysis can support international trade by resolving disputes related to plant pathogen detection.