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Mutation, Gene Flow, and Genetic Drift01:09

Mutation, Gene Flow, and Genetic Drift

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In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
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Mutations01:39

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Mutations01:35

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Mutations are changes in the sequence of DNA. These changes can occur spontaneously or they can be induced by exposure to environmental factors. Mutations can be characterized in a number of different ways: whether and how they alter the amino acid sequence of the protein, whether they occur over a small or large area of DNA, and whether they occur in somatic cells or germline cells.
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RNA Editing02:23

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RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
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A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
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Efficient Gene Editing at Major CFTR Mutation Loci.

Jinxue Ruan1, Hiroyuki Hirai2, Dongshan Yang3

  • 1Center for Advanced Models for Translational Sciences and Therapeutics, University of Michigan Medical Center, University of Michigan Medical School, 2800 Plymouth Road, Ann Arbor, MI 48109, USA; Key Lab of Swine Genetics and Breeding of Ministry of Agriculture and Rural Affairs, College of Animal Sciences & Technology, Huazhong Agricultural University, Wuhan, China.

Molecular Therapy. Nucleic Acids
|March 11, 2019
PubMed
Summary
This summary is machine-generated.

Precise gene editing offers a promising therapy for cystic fibrosis (CF). Electroporation of CRISPR/Cas9 ribonucleoprotein achieved high gene correction efficiency in CFTR mutations, restoring CFTR function.

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Area of Science:

  • Genetics
  • Molecular Biology
  • Regenerative Medicine

Background:

  • Cystic Fibrosis (CF) is a lethal autosomal recessive genetic disorder caused by mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene.
  • Nuclease-mediated precise gene editing (PGE) is a potential therapeutic strategy for CF, but requires efficient, viral vector-free (VDR-free) delivery methods.

Purpose of the Study:

  • To compare different transfection methods and formats for delivering CRISPR/Cas9 and single-stranded oligodeoxynucleotides (ssODNs) for precise gene editing of CFTR mutations.
  • To establish an efficient VDR-free gene editing strategy for CF therapy.

Main Methods:

  • Comparison of transfection methods (lipofectamine vs. electroporation) and formats (plasmid DNA vs. ribonucleoprotein) for CRISPR/Cas9 delivery.
  • Utilized CRISPR/Cas9 ribonucleoprotein (Cas9 RNP) complexes with ssODNs to target CFTR mutation loci in induced pluripotent stem cells (iPSCs).
  • Assessed gene editing efficiency and CFTR function restoration in iPSC-derived lung organoids and CFPAC-1 cells.

Main Results:

  • Electroporation of Cas9 RNP demonstrated superior efficiency compared to other tested methods.
  • Achieved 4.8% to 27.2% editing efficiency for dF508, G542X, and G551D mutations in wild-type iPSCs.
  • Demonstrated over 20% precise correction rate in a patient-derived iPSC line and restored CFTR function in relevant cellular models.

Conclusions:

  • Electroporation of CRISPR/Cas9 RNP is an effective VDR-free method for precise gene editing of CFTR mutations.
  • This approach shows feasibility for developing gene editing-based therapeutics for monogenic diseases like CF.
  • Restoration of CFTR function in organoids and cell lines validates the therapeutic potential of this gene editing strategy.