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Updated: Jan 19, 2026

ARL Spectral Fitting as an Application to Augment Spectral Data via Franck-Condon Lineshape Analysis and Color Analysis
Published on: August 19, 2021
M-BLANK: a program for the fitting of X-ray fluorescence spectra
Andrew M Crawford1, Aniruddha Deb1, James E Penner-Hahn1
1Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, MI 48109-1055, USA.
Removing per-pixel baselines from X-ray fluorescence (XRF) data can cause errors. Calculating an average blank spectrum and subtracting it improves elemental map quantitation for XRF analysis.
Area of Science:
- Elemental analysis
- X-ray fluorescence microscopy
- Biophysical techniques
Background:
- X-ray fluorescence (XRF) microscopy is crucial for elemental mapping.
- Accurate elemental quantitation requires precise data fitting.
- Current fitting methods often involve per-pixel baseline removal.
Purpose of the Study:
- To evaluate the impact of per-pixel baseline removal on XRF data quantitation.
- To propose an improved method for baseline correction in XRF analysis.
- To demonstrate the effectiveness of the proposed method using biological samples.
Main Methods:
- Acquisition of X-ray fluorescence data from yeast and glial cells using X-ray microprobe and nanoprobe.
- Application of per-pixel baseline removal in data fitting.
- Development and application of an average blank spectrum subtraction method.
- Comparative analysis of quantitation results from both methods.
Main Results:
- Per-pixel baseline removal introduces significant, systematic errors in elemental quantitation.
- The average blank spectrum subtraction method yields substantially improved data accuracy.
- Quantitation of elemental maps in biological samples (yeast, glial cells) is more reliable with the proposed method.
Conclusions:
- Per-pixel baseline correction is an inadequate method for XRF data analysis.
- Average blank spectrum subtraction offers a more robust approach for accurate elemental mapping.
- This improved method enhances the reliability of quantitative elemental analysis in biological and potentially other research areas.
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