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Updated: Jan 28, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
Structure⁻Activity Prediction of ACE Inhibitory/Bitter Dipeptides-A Chemometric Approach Based on Stepwise Regression
Monika Hrynkiewicz1, Anna Iwaniak2, Justyna Bucholska3
1Faculty of Food Science, Chair of Food Biochemistry, University of Warmia and Mazury in Olsztyn, Pl. Cieszyński 1, 10-726 Olsztyn-Kortowo, Poland. monika.protasiewicz@uwm.edu.pl.
Abstract:
Forward and backward stepwise regression (FR and BR, respectively) was applied for the structure⁻bioactivity prediction of angiotensin converting enzyme (ACE)-inhibitory/bitter-tasting dipeptides. The datasets used in this study consisted of 28 sequences and numerical variables reflecting dipeptides' physicochemical nature. The data were acquired from the BIOPEP-UWM, Biological Magnetic Resonance Databank, ProtScale, and AAindex databases. The calculations were computed using STATISTICA®13.1. FR/BR models differed in R² (0.91/0.76, respectively). The impact of C-atC(-) and N-Molw(+) on the dual function of dipeptides was observed. Positive (+) and negative (-) correlations with log IC50 are presented in parens. Moreover, C-Bur(+), N-atH(+), and N-Pol(-) were also found to be important in the FR model. The additional statistical significance of N-bul(-), N-Bur(-), and N-Hdr(+) was reported in the BR model. These attributes reflected the composition of the dipeptides. We report that the "ideal" bitter ACE inhibitor should be composed of P, Y, F (C-end) and G, V, I, L (N-end). Functions: log Rcaf. = f (observed log IC50) and log Rcaf. = f (predicted log IC50) revealed no direct relationships between ACE inhibition and the bitterness of the dipeptides. It probably resulted from some structural discrepancies between the ACE inhibitory/bitter peptides and/or the measure of activity describing one of the two bioactivities. Our protocol can be applicable for the structure⁻bioactivity prediction of other bioactivities peptides.
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