Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Co-activators and Co-repressors02:04

Co-activators and Co-repressors

8.6K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
8.6K
Co-activators and Co-repressors02:04

Co-activators and Co-repressors

3.0K
3.0K
tRNA Activation02:26

tRNA Activation

22.9K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
22.9K
tRNA Activation02:26

tRNA Activation

8.6K
8.6K
Activation Energy01:26

Activation Energy

86.5K
Activation energy is the minimum amount of energy necessary for a chemical reaction to move forward. The higher the activation energy, the slower the rate of the reaction. However, adding heat to the reaction will increase the rate, since it causes molecules to move faster and increase the likelihood that molecules will collide. The collision and breaking of bonds represents the uphill phase of a reaction and generates the transition state. The transition state is an unstable high-energy state...
86.5K
Eukaryotic Transcription Activators02:42

Eukaryotic Transcription Activators

12.8K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
12.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Beyond the protein lattice: bacterial S-layer glycans - from structure to functional frontier.

Current opinion in microbiology·2026
Same author

Molecular insights into the dual-glycoprotein surface layer of the oral bacterium Tannerella serpentiformis.

Journal of molecular graphics & modelling·2026
Same author

Effect of Low-Level Laser Therapy on Periodontal Host Cells and a Seven-Species Periodontitis Model Biofilm.

International journal of molecular sciences·2025
Same author

Vitamin D<sub>3</sub> Modulates Inflammatory and Antimicrobial Responses in Oral Epithelial Cells Exposed to Periodontitis-Associated Bacteria.

International journal of molecular sciences·2025
Same author

A new age in structural S-layer biology: Experimental and in silico milestones.

The Journal of biological chemistry·2025
Same author

Synthesis, Microbiology, and Biophysical Characterization of Mutanofactins from the Human Oral Microbiome.

ACS central science·2025
Same journal

Nanotechnology-Stem Cell Strategies in 3D Glioblastoma Organoid: Targeting Glioma Stem Cells Within a Complex Tumor Microenvironment.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Mapping the 3D Chromosome Organization of a Biosynthetic Gene Cluster by Capture Hi-C (CHi-C).

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Mapping the 3D Chromosome Organization of Streptomyces by Hi-C.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

CUT&Tag Epigenomic Profiling of Biosynthetic Gene Clusters in Arabidopsis thaliana.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Rhizobium rhizogenes-Mediated Hairy Root Transformation Protocol for Lotus japonicus and Other Legumes.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Characterization of Bioactive Saponins from Sea Cucumbers.

Methods in molecular biology (Clifton, N.J.)·2026
See all related articles

Related Experiment Video

Updated: Jan 27, 2026

Assaying Protein Kinase Activity with Radiolabeled ATP
08:05

Assaying Protein Kinase Activity with Radiolabeled ATP

Published on: May 26, 2017

19.3K

Assaying Fucosidase Activity.

Zoë Anne Megson1, Paul Messner2, Christina Schäffer3

  • 1Sandoz GmbH, Langkampfen, Austria.

Methods in Molecular Biology (Clifton, N.J.)
|March 14, 2019
PubMed
Summary
This summary is machine-generated.

Characterize recombinant glycosidases using simple colorimetric assays and complex substrates to determine enzyme functionality and linkage specificity. This protocol guides initial enzyme characterization for research applications.

Keywords:
Cation dependenceEnzymatic activityFucosidaseHPAEC-PADReaction rateSubstrate specificitypH optimum

More Related Videos

In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity
09:33

In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity

Published on: January 5, 2016

10.2K
Antibody-Free Assay for RNA Methyltransferase Activity Analysis
08:31

Antibody-Free Assay for RNA Methyltransferase Activity Analysis

Published on: July 9, 2019

7.6K

Related Experiment Videos

Last Updated: Jan 27, 2026

Assaying Protein Kinase Activity with Radiolabeled ATP
08:05

Assaying Protein Kinase Activity with Radiolabeled ATP

Published on: May 26, 2017

19.3K
In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity
09:33

In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity

Published on: January 5, 2016

10.2K
Antibody-Free Assay for RNA Methyltransferase Activity Analysis
08:31

Antibody-Free Assay for RNA Methyltransferase Activity Analysis

Published on: July 9, 2019

7.6K

Area of Science:

  • Biochemistry
  • Enzymology

Background:

  • Recombinant glycosidases require thorough characterization to understand their functionality and specificity.
  • Commercially available substrates are crucial tools for assessing enzyme activity and specificity.

Purpose of the Study:

  • To provide a protocol for the initial characterization of recombinant glycosidases.
  • To demonstrate the use of colorimetric assays and complex substrates for enzyme analysis.
  • To use a recombinant α-L-fucosidase as an example for glycosidase characterization.

Main Methods:

  • Utilizing colorimetric assays with p-nitrophenyl substrates for screening enzyme activity under various conditions (buffer, pH, ion dependence, temperature).
  • Employing more complex sugars with diverse glycosidic bonds to determine linkage specificity.
  • Applying sophisticated analytical methods for detailed characterization.

Main Results:

  • Colorimetric assays efficiently screen optimal conditions and basic activity parameters for glycosidases.
  • Complex substrates are necessary for accurate determination of glycosidase linkage specificity.
  • The protocol provides a framework for comprehensive initial characterization.

Conclusions:

  • Initial characterization of recombinant glycosidases involves a combination of simple and complex substrate assays.
  • Colorimetric assays are valuable for preliminary screening and determining activity optima.
  • Accurate linkage specificity determination requires advanced methods and diverse substrates.