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Updated: Jan 27, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Rad52 prevents excessive replication fork reversal and protects from nascent strand degradation
Eva Malacaria1, Giusj Monia Pugliese1, Masayoshi Honda2
1Mechanisms, Biomarkers and Models Unit, Department of Environment and Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy.
Abstract:
Stabilisation of stalled replication forks prevents excessive fork reversal and their pathological degradation, which can undermine genome integrity. Here we investigate a physiological role of RAD52 at stalled replication forks by using human cell models depleted of RAD52, a specific small-molecule inhibitor of the RAD52-ssDNA interaction, in vitro and single-molecule analyses. We demonstrate that RAD52 prevents excessive degradation of reversed replication forks by MRE11. Mechanistically, RAD52 binds to the stalled replication fork, promotes its occlusion and counteracts loading of SMARCAL1 in vitro and in vivo. Loss of the RAD52 function results in a slightly-defective replication restart, persistence of under-replicated regions and chromosome instability. Moreover, the RAD52-inhibited cells rely on RAD51 for completion of replication and viability upon replication arrest. Collectively, our data suggest an unexpected gatekeeper mechanism by which RAD52 limits excessive remodelling of stalled replication forks, thus indirectly assisting RAD51 and BRCA2 in protecting forks from unscheduled degradation and preventing genome instability.
Insights
RAD52 safeguards genome stability by preventing excessive degradation of stalled replication forks. It acts as a gatekeeper, limiting fork remodelling and supporting DNA repair proteins like RAD51 and BRCA2.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Replication fork stability is crucial for genome integrity.
- Uncontrolled degradation of stalled forks can lead to genomic instability.
Purpose of the Study:
- To investigate the physiological role of RAD52 at stalled replication forks.
- To elucidate the mechanism by which RAD52 influences fork stability and genome integrity.
Main Methods:
- Human cell models with RAD52 depletion.
- Small-molecule inhibitor targeting the RAD52-ssDNA interaction.
- In vitro and single-molecule analyses.
- Assays for replication restart, fork degradation, and chromosome instability.
Main Results:
- RAD52 prevents excessive degradation of reversed replication forks by MRE11.
- RAD52 binds to stalled forks, promotes occlusion, and counteracts SMARCAL1 loading.
- Loss of RAD52 function leads to defective replication restart and chromosome instability.
- RAD52 inhibition increases reliance on RAD51 for replication completion and viability.
Conclusions:
- RAD52 acts as a gatekeeper, limiting excessive remodelling of stalled replication forks.
- RAD52 indirectly assists RAD51 and BRCA2 in protecting forks from degradation.
- RAD52 plays a vital role in preventing genome instability during replication stress.
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