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Updated: Jan 26, 2026

Investigation of Spatial Interaction Between Astrocytes and Neurons in Cleared Brains
Published on: March 31, 2022
Visualizing astrocytes in the deep mouse brain in vivo.
Hongji Liu1, Jiaqi Wang1, Ziwei Zhuang1
1Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, China.
Three-photon fluorescence imaging allows visualization of astrocytes deep within the mouse brain. This novel technique achieves greater imaging depth than traditional methods, overcoming previous limitations.
Area of Science:
- Neuroscience
- Biomedical Imaging
- Cell Biology
Background:
- Astrocytes are crucial glial cells in the central nervous system, but their visualization in deep brain regions in vivo has been challenging.
- Existing imaging techniques, such as two-photon fluorescence microscopy, have limitations in achieving sufficient depth for studying deep brain structures.
- The development of advanced imaging methods is essential for understanding astrocyte function in complex neural circuits.
Purpose of the Study:
- To demonstrate the efficacy of three-photon fluorescence imaging for visualizing astrocytes in the deep brain in vivo.
- To optimize imaging parameters by measuring the wavelength-dependent three-photon action cross-section of sulforhodamine 101 (SR101).
- To achieve unprecedented imaging depths for astrocyte visualization compared to existing methods.
Main Methods:
- Utilized three-photon fluorescence imaging with sulforhodamine 101 (SR101) labeling for astrocytes and vasculature in live mouse brains.
- Performed wavelength-dependent measurements of the three-photon action cross-section (ησ 3 ) of SR101 to guide excitation wavelength selection.
- Quantitatively compared signal differences between labeled blood vessels and astrocytes to assess imaging challenges.
Main Results:
- Achieved an imaging depth of 1340 μm into the mouse brain, demonstrating the technique's deep imaging capability.
- Successfully visualized astrocytes at depths of 910 μm, significantly deeper (30%) than achievable with two-photon fluorescence microscopy.
- Confirmed that imaging depth is not limited by signal-to-background ratio, unlike in two-photon imaging.
Conclusions:
- Three-photon fluorescence imaging of SR101-labeled astrocytes is a powerful technique for in vivo deep brain visualization.
- This method overcomes the depth limitations of two-photon microscopy, enabling deeper exploration of astrocyte function.
- Further research is needed to address challenges in visualizing astrocytes below white matter tracts.
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