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Updated: Jan 26, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Methicillin-Resistant Staphylococcus aureus Blood Isolates Harboring a Novel Pseudo-staphylococcal Cassette
Eun-Jeong Yoon1, Hyukmin Lee1, Dokyun Kim1
1Department of Laboratory Medicine, Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, South Korea.
Abstract:
The aim of this work was to assess a novel pseudo-staphylococcal cassette chromosome mec (ΨSCCmec) element in methicillin-resistant Staphylococcus aureus (MRSA) blood isolates. Community-associated MRSA E16SA093 and healthcare-associated MRSA F17SA003 isolates were recovered from the blood specimens of patients with S. aureus bacteremia in 2016 and in 2017, respectively. Antimicrobial susceptibility was determined via the disk diffusion method, and SCCmec typing was conducted by multiplex polymerase chain reaction. Whole genome sequencing was carried out by single molecule real-time long-read sequencing. Both isolates belonged to sequence type 72 and agr-type I, and they were negative for Panton-Valentine leukocidin and toxic shock syndrome toxin. The spa-types of E16SA093 and F17SA003 were t324 and t2460, respectively. They had a SCCmec IV-like element devoid of the cassette chromosome recombinase (ccr) gene complex, designated as ΨSCCmec E16SA093. The element was manufactured from SCCmec type IV and the deletion of the ccr gene complex and a 7.0- and 31.9-kb portion of each chromosome. The deficiency of the ccr gene complex in the SCCmec unit is likely resulting in mobility loss, which would be an adaptive evolutionary mechanism. The dissemination of this clone should be monitored closely.
Insights
Researchers identified a novel pseudo-staphylococcal cassette chromosome mec (ΨSCCmec) element in MRSA blood isolates. This element lacks mobility genes, suggesting an evolutionary adaptation in these methicillin-resistant Staphylococcus aureus strains.
Area of Science:
- Microbiology
- Genetics
- Infectious Diseases
Background:
- Methicillin-resistant Staphylococcus aureus (MRSA) poses a significant threat in both community and healthcare settings.
- The staphylococcal cassette chromosome mec (SCCmec) element is crucial for MRSA's methicillin resistance.
- Understanding novel SCCmec variants is vital for tracking MRSA evolution and spread.
Purpose of the Study:
- To characterize a newly identified pseudo-SCCmec (ΨSCCmec) element in MRSA blood isolates.
- To investigate the genetic makeup and potential implications of this novel element.
- To assess the evolutionary significance of ΨSCCmec in MRSA.
Main Methods:
- Isolation and identification of MRSA from blood specimens.
- Antimicrobial susceptibility testing using disk diffusion.
- SCCmec typing via multiplex polymerase chain reaction (PCR).
- Whole genome sequencing using single molecule real-time (SMRT) technology.
Main Results:
- Two MRSA isolates (E16SA093 and F17SA003) with sequence type 72 and agr-type I were identified.
- Both isolates possessed a novel SCCmec IV-like element lacking the cassette chromosome recombinase (ccr) gene complex, termed ΨSCCmec.
- This ΨSCCmec element resulted from the deletion of the ccr complex and adjacent chromosomal DNA.
Conclusions:
- The identified ΨSCCmec element, lacking the ccr gene complex, is likely non-mobile, representing a potential evolutionary adaptation.
- The absence of mobility genes may confer a selective advantage, influencing MRSA's evolutionary trajectory.
- Close monitoring of MRSA clones carrying this ΨSCCmec element is recommended due to potential dissemination.
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