Related Experiment Video
Updated: Jan 25, 2026

DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
Published on: December 29, 2021
WWP2 ubiquitylates RNA polymerase II for DNA-PK-dependent transcription arrest and repair at DNA breaks
Pierre Caron1, Tibor Pankotai2,3,4,5, Wouter W Wiegant1
1Department of Human Genetics, Leiden University Medical Center, 2333 ZC Leiden, The Netherlands.
Abstract:
DNA double-strand breaks (DSBs) at RNA polymerase II (RNAPII) transcribed genes lead to inhibition of transcription. The DNA-dependent protein kinase (DNA-PK) complex plays a pivotal role in transcription inhibition at DSBs by stimulating proteasome-dependent eviction of RNAPII at these lesions. How DNA-PK triggers RNAPII eviction to inhibit transcription at DSBs remains unclear. Here we show that the HECT E3 ubiquitin ligase WWP2 associates with components of the DNA-PK and RNAPII complexes and is recruited to DSBs at RNAPII transcribed genes. In response to DSBs, WWP2 targets the RNAPII subunit RPB1 for K48-linked ubiquitylation, thereby driving DNA-PK- and proteasome-dependent eviction of RNAPII. The lack of WWP2 or expression of nonubiquitylatable RPB1 abrogates the binding of nonhomologous end joining (NHEJ) factors, including DNA-PK and XRCC4/DNA ligase IV, and impairs DSB repair. These findings suggest that WWP2 operates in a DNA-PK-dependent shutoff circuitry for RNAPII clearance that promotes DSB repair by protecting the NHEJ machinery from collision with the transcription machinery.
Insights
WWP2 ubiquitinates RNA polymerase II (RNAPII) to promote its eviction from DNA double-strand breaks (DSBs). This process, regulated by DNA-PK, facilitates DNA repair by clearing transcription machinery.
Area of Science:
- Molecular Biology
- DNA Repair
- Gene Transcription
Background:
- DNA double-strand breaks (DSBs) halt transcription by RNA polymerase II (RNAPII).
- The DNA-dependent protein kinase (DNA-PK) complex mediates RNAPII eviction at DSBs, but the mechanism is unclear.
Purpose of the Study:
- To elucidate the mechanism by which DNA-PK triggers RNAPII eviction at DSBs.
- To identify the factors involved in targeting RNAPII for eviction.
Main Methods:
- Investigated the association of WWP2 with DNA-PK and RNAPII complexes.
- Assessed WWP2 recruitment to DSBs.
- Examined the ubiquitylation of RPB1 by WWP2.
- Studied the impact of WWP2 depletion or non-ubiquitylatable RPB1 on DNA repair factor binding and DSB repair.
Main Results:
- WWP2, a HECT E3 ubiquitin ligase, associates with DNA-PK and RNAPII and is recruited to DSBs.
- WWP2 mediates K48-linked ubiquitylation of the RPB1 subunit of RNAPII, leading to its eviction via the proteasome.
- Loss of WWP2 or non-ubiquitylatable RPB1 impairs the recruitment of nonhomologous end joining (NHEJ) factors and hinders DSB repair.
Conclusions:
- WWP2 acts as a crucial E3 ligase in a DNA-PK-dependent pathway for RNAPII clearance at DSBs.
- This RNAPII eviction mechanism promotes efficient DSB repair by preventing conflicts between transcription and NHEJ machinery.
Related Concept Videos
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Overview of DNA Repair
Chemically...
Overview of DNA Repair
Eukaryotic RNA Polymerases
All three eukaryotic RNAPs require specific transcription factors, of which the...
Bacterial RNA Polymerase
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
RNA Polymerase II Accessory Proteins

