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Published on: January 7, 2019
Quantifying Dynamic Regulation in Metabolic Pathways with Nonparametric Flux Inference.
1Centre for Integrative Systems Biology and Bioinformatics, Department of Life Sciences, Imperial College London, London, United Kingdom; School of Computing, Electronics, and Mathematics, Coventry University, Coventry, United Kingdom.
We present a new method using Gaussian processes to infer metabolic pathway dynamics from metabolite measurements. This approach enables dynamic hierarchical regulation analysis without needing time-dependent flux data.
Area of Science:
- Systems Biology
- Metabolic Engineering
- Computational Biology
Background:
- Understanding cellular metabolism regulation is crucial in systems biology.
- Hierarchical regulation analysis is effective for steady-state studies but limited for dynamic analysis due to challenges in measuring time-dependent metabolic flux.
Purpose of the Study:
- To develop a novel nonparametric method for inferring metabolic pathway dynamics.
- To enable dynamic hierarchical regulation analysis without requiring time-dependent flux measurements.
Main Methods:
- Utilized Gaussian processes for nonparametric inference of metabolic pathway dynamics.
- Developed a method to infer dynamics solely from metabolite concentration measurements.
Main Results:
- Successfully inferred the dynamics of a metabolic pathway using only metabolite data.
- Obtained a dynamic view of hierarchical regulation processes controlling pathway activity over time.
Conclusions:
- The developed method allows for dynamic hierarchical regulation analysis.
- This approach overcomes the limitations of previous methods by not requiring explicit time-dependent flux measurements.
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