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Updated: Jan 25, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
INKA2, a novel p53 target that interacts with the serine/threonine kinase PAK4
Yu-Yu Liu1, Chizu Tanikawa2, Koji Ueda3
1Laboratory of Clinical Genome Sequencing, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo 108‑8639, Tokyo, Japan.
Abstract:
The p53 protein is a tumour suppressor and transcription factor that regulates the expression of target genes involved in numerous stress responses systems. In this study, we designed a screening strategy using DNA damage‑induced mouse and human transcriptome data to identify novel downstream targets of p53. Our method selected genes with an induced expression in multiple organs of X‑ray‑irradiated p53 wild‑type mice. The expression of inka box actin regulator 2 gene, known as Inka2, was upregulated in 12 organs when p53 expression was induced. Similarly, INKA2 was induced in a p53‑dependent manner at both the mRNA and protein level in human cells treated with adriamycin. Reporter assays confirmed that p53 directly regulated INKA2 through an intronic binding site. The overexpression of INKA2 produced a slight decrease in cancer cell growth in the colony formation assay. Moreover, the analysis of The Cancer Genome Atlas (TCGA) data revealed a decreased INKA2 expression in tumour samples carrying p53 mutations compared with p53 wild‑type samples. In addition, significantly higher levels of DNA methylation were observed in the INKA2 promoter in tumour samples, concordant with the reduced INKA2 expression in tumour tissues. These results demonstrate the potential of INKA2 as a cancer cell growth inhibitor. Furthermore, INKA2 protein interacts with the serine/threonine‑protein kinase, p21 (RAC1) activated kinase (PAK)4, which phosphorylates β‑catenin to prevent ubiquitin‑proteasomal degradation. As β‑catenin was downregulated in a stable INKA2‑expressing cell line, the findings of this study suggest that INKA2 is a novel, direct downstream target of p53 that potentially decreases cell growth by inhibiting the PAK4‑β‑catenin pathway.
Insights
The study identifies Inka2 as a novel p53 target gene that inhibits cancer cell growth by regulating the PAK4-β-catenin pathway. This discovery offers potential for new cancer therapies.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- The p53 protein is a crucial tumor suppressor and transcription factor regulating cellular stress responses.
- Identifying novel downstream targets of p53 is essential for understanding tumor suppression mechanisms.
Purpose of the Study:
- To identify novel downstream target genes of p53 using a screening strategy.
- To investigate the role of the identified gene, Inka2, in cancer cell growth and its regulation by p53.
Main Methods:
- Utilized DNA damage-induced mouse and human transcriptome data for gene screening.
- Performed reporter assays to confirm p53 regulation of Inka2.
- Analyzed The Cancer Genome Atlas (TCGA) data for Inka2 expression in tumors.
- Investigated protein-protein interactions involving Inka2.
Main Results:
- Identified Inka2 (Inhibitor of Kinase-Activated Actin Regulator 2) as a novel p53 target gene, upregulated in multiple organs and human cells.
- Confirmed direct p53 regulation of Inka2 via an intronic binding site.
- Observed decreased Inka2 expression and increased DNA methylation in p53-mutated tumors.
- Demonstrated that Inka2 overexpression slightly inhibits cancer cell growth and interacts with PAK4 to downregulate β-catenin.
Conclusions:
- Inka2 is a novel, direct downstream target of p53 with potential as a cancer cell growth inhibitor.
- Inka2 may decrease cell growth by inhibiting the PAK4-β-catenin pathway.
- Further research into Inka2's role in cancer is warranted.
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