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De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
Published on: February 18, 2022
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Influenza A Virus Infection Induces Viral and Cellular Defective Ribosomal Products Encoded by Alternative Reading
Damien J Zanker1, Sara Oveissi1, David C Tscharke2
1Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria 3086, Australia.
Journal of Immunology (Baltimore, Md. : 1950)
|May 17, 2019
Summary
Antiviral immunity utilizes alternative reading frame (ARF)-derived peptides, like NS1-ARF21-8 from influenza A virus (IAV), to activate CD8+ T cells. This process highlights how the immune system exploits translation errors for defense.
Area of Science:
- Immunology
- Virology
- Molecular Biology
Background:
- The role of alternative reading frame (ARF)-derived peptides in antiviral CD8+ T cell responses remains unclear.
- Influenza A virus (IAV) NS1 protein is crucial for viral evasion of host immunity.
Purpose of the Study:
- To investigate the immunogenicity of ARF-derived peptides during IAV infection.
- To characterize the CD8+ T cell response to a novel IAV-derived epitope.
Main Methods:
- Identification and synthesis of a predicted ARF-derived peptide epitope (NS1-ARF21-8).
- Assessment of T cell responses in IAV-infected BALB/c mice using ELISPOT assays.
- Analysis of peptide presentation from unspliced viral mRNA.
Main Results:
- The NS1-ARF21-8 epitope elicits a strong, functional CD8+ T cell response in IAV-infected mice.
- This epitope is presented from unspliced NS mRNA, originating from downstream translation initiation.
- The source peptide has no discernible biological function or impact on viral pathogenicity.
Conclusions:
- Antiviral immunity can leverage naturally occurring translational errors to generate functional CD8+ T cell responses.
- IAV infection can enhance cellular ARF translation, suggesting potential implications for virus-induced autoimmunity.
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