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Published on: January 24, 2018
On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
Gianpaolo Gobbo1, Giovanni Ciccotti2, Bernhardt L Trout1
1Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
This study validates a computational method for calculating molecular solubilities, even for complex systems with constraints. The findings extend the applicability of atomistic simulations for solubility predictions in drug discovery.
Area of Science:
- Computational Chemistry
- Molecular Modeling
- Physical Chemistry
Background:
- Atomistic simulations are crucial for predicting molecular solubilities.
- The Einstein crystal method offers a promising approach for solubility calculations.
- Holonomic molecular constraints are common in practical simulations but pose theoretical challenges.
Purpose of the Study:
- To investigate the applicability of an extended Einstein crystal method for systems with holonomic molecular constraints.
- To demonstrate that the derived mathematical relation for solubility calculation remains valid despite constraints.
Main Methods:
- Utilized an extension of the Einstein crystal method for atomistic simulations.
- Analyzed the mathematical derivation of the partition function factorization under holonomic constraints.
- Applied the methodology to systems featuring molecular constraints.
Main Results:
- The mathematical relation for solubility calculation, derived from partition function factorization, is applicable even for systems with holonomic constraints.
- A slightly modified mathematical procedure is required, but the core relation holds.
- This extends the utility of the method to a wider range of practical molecular simulations.
Conclusions:
- The extended Einstein crystal method is robust and applicable for computing solubilities in molecular systems with holonomic constraints.
- This work broadens the scope of atomistic simulations for solubility prediction, particularly for challenging pharmaceutical molecules.
- The findings facilitate more accurate solubility predictions in drug development and materials science.
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