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Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project
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Cloud bursting galaxy: federated identity and access management
Vahid Jalili1, Enis Afgan2, James Taylor2
1Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA.
Bioinformatics (Oxford, England)
|June 15, 2019
Summary
Securely access distributed biomedical data in the cloud using Galaxy. This approach uses OpenID Connect and OAuth2 for safe, easy data analysis across platforms without sharing credentials.
Area of Science:
- Bioinformatics
- Computational Biology
- Data Security
Background:
- Large biomedical datasets (genomics, imaging) are moving to cloud platforms for scalable resources.
- Secure access to distributed biomedical data across cloud platforms is a significant challenge.
- Existing web protocols for authentication and authorization are underutilized and difficult to implement in bioinformatics.
Purpose of the Study:
- To develop a generic and extensible method for secure access to distributed biomedical datasets on cloud platforms.
- To integrate best-practice web security protocols with a widely used scientific computational workbench.
- To enable researchers to access and analyze multi-cloud biomedical data without specialized security knowledge.
Main Methods:
- Combined OpenID Connect and OAuth2 (web protocols for authentication and authorization) with the Galaxy computational workbench.
- Developed an enhanced version of Galaxy for seamless data access across multiple cloud providers.
- Implemented a system relying on temporary, auto-refreshing tokens instead of permanent user credentials.
Main Results:
- Users can access and analyze distributed biomedical datasets across multiple cloud platforms through an enhanced Galaxy interface.
- The system eliminates the need for users to share permanent credentials, enhancing security.
- This approach is generalizable to various identity providers and cloud platforms, minimizing unauthorized data access risks.
Conclusions:
- The enhanced Galaxy workbench provides a unique solution for secure, multi-cloud biomedical data access.
- This method simplifies secure data handling for researchers, regardless of technical expertise.
- The system promotes wider adoption of robust web security practices in bioinformatics research.
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