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Updated: Jan 23, 2026

A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Aminoglycoside drugs induce efficient read-through of CDKL5 nonsense mutations, slightly restoring its kinase
Maria Fazzari1, Angelisa Frasca1, Francesco Bifari1
1Department of Medical Biotechnology and Translational Medicine, University of Milan , Segrate , Italy.
Abstract:
The X-linked CDKL5 gene codes for a kinase whose mutations have been associated with a suite of neurodevelopmental disorders generally characterized by early-onset epileptic encephalopathy and severe intellectual disability. The impact of these mutations on CDKL5 functions and brain development remain mainly unknown, although the importance of maintaining the catalytic activity is generally recognized. Since no cure exists for CDKL5 disorders, the demand for innovative therapies is a real emergency. The recent discovery that CDKL5 is dosage sensitive poses concerns on conventional protein and gene augmentative therapies. Thus, RNA-based therapeutic approaches might be preferred. We studied the efficacy of read-through therapy on CDKL5 premature termination codons (PTCs) that correspond roughly to 15% of all mutations. Our results provide the first demonstration that all tested CDKL5 nonsense mutations are efficiently suppressed by aminoglycoside drugs. The functional characterization of the restored full-length CDKL5 reveals that read-through proteins fully recover their subcellular localization, but only partially rescue their catalytic activity. Since read-through can cause amino acid substitution, CDKL5 patients carrying the PTC outside the catalytic domain might benefit more from a nonsense suppression therapy. Eventually, we demonstrate that non-aminoglycoside drugs, such as Ataluren (PTC124) and GJ072, are unable to induce read-through activity on CDKL5 PTCs. Although these drugs might be more effective in vivo, these results question the validity of the Ataluren phase 2 clinical trial that is currently ongoing on CDKL5 patients.
Insights
Aminoglycoside drugs can suppress CDKL5 nonsense mutations, restoring protein localization but not full function. This suggests RNA-based therapies may benefit CDKL5 disorder patients, but non-aminoglycoside drugs showed no efficacy.
Area of Science:
- Neuroscience
- Genetics
- Pharmacology
Background:
- Mutations in the X-linked CDKL5 gene cause severe neurodevelopmental disorders.
- CDKL5 (Cyclin Dependent Kinase Like 5) function and the impact of mutations are poorly understood.
- Existing therapies for CDKL5 disorders are limited, highlighting the need for novel therapeutic strategies.
Purpose of the Study:
- To investigate the efficacy of RNA-based read-through therapy for CDKL5 premature termination codons (PTCs).
- To assess the functional recovery of CDKL5 protein after read-through suppression.
- To evaluate the potential of non-aminoglycoside drugs in treating CDKL5 mutations.
Main Methods:
- Utilized aminoglycoside drugs to induce read-through of CDKL5 nonsense mutations.
- Performed functional characterization of restored full-length CDKL5 proteins.
- Tested non-aminoglycoside drugs, including Ataluren (PTC124) and GJ072, for read-through activity.
Main Results:
- Aminoglycoside drugs efficiently suppressed all tested CDKL5 nonsense mutations.
- Read-through proteins showed full recovery of subcellular localization but only partial rescue of catalytic activity.
- Non-aminoglycoside drugs Ataluren and GJ072 failed to induce read-through activity on CDKL5 PTCs.
Conclusions:
- Nonsense suppression therapy using aminoglycosides shows promise for CDKL5 disorders, particularly for mutations outside the catalytic domain.
- The partial functional recovery necessitates further research into optimizing read-through therapies.
- The ineffectiveness of Ataluren and GJ072 raises questions about ongoing clinical trials for CDKL5 patients.
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