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Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Hydrogen bond dynamics and conformational flexibility in antipsychotics
Jose E M Pereira1, Juergen Eckert2, Svemir Rudic3
1The Niels Bohr Institute, University of Copenhagen, DK-2100, Copenhagen, Denmark. pereira.jose0001@gmail.com.
Understanding the molecular dynamics of antipsychotics like haloperidol, aripiprazole, and quetiapine is crucial for developing new central nervous system treatments. Analyzing their solid-state characteristics aids in pharmaceutical research and in silico drug discovery.
Area of Science:
- Solid-state chemistry
- Computational chemistry
- Neuroscience
Background:
- Central nervous system disorders require effective treatments.
- Bioactive molecules with known tolerable moieties are key.
- Understanding solid-state characteristics and intramolecular dynamics of drugs is vital for pharmaceutical research and in silico drug discovery.
Purpose of the Study:
- To investigate the structural and molecular stability of three antipsychotic drugs: haloperidol, aripiprazole, and quetiapine hemifumarate.
- To compare experimental molecular vibrations with theoretical calculations for these antipsychotics.
Main Methods:
- Inelastic neutron spectroscopy (INS) was used to observe molecular vibrations.
- Periodic calculations using the Vienna ab initio simulation package (VASP) were performed for theoretical analysis.
- Comparison of experimental INS data with VASP calculations for crystalline antipsychotics.
Main Results:
- Most observed features in the lattice region were reasonably represented by theoretical calculations.
- The overall spectra were complex, preventing traditional assignment of all normal modes.
- Discrepancies between experimental and theoretical data highlight the complexity of antipsychotic molecular dynamics.
Conclusions:
- The study provides insights into the solid-state characteristics and molecular stability of key antipsychotics.
- Complex molecular dynamics in antipsychotics necessitate advanced analytical approaches.
- Drug candidate discovery should consider both receptor flexibility and active molecule dynamics for improved binding affinity predictions.
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