Whole-Section Tumor Micro-Architecture Analysis by a Two-Dimensional Phasor-Based Approach Applied to
Riccardo Scodellaro1, Margaux Bouzin1, Francesca Mingozzi2
1Physics Department, Università degli Studi di Milano-Bicocca, Milan, Italy.
Frontiers in Oncology
|July 6, 2019
Summary
Phasor-based analysis of Second Harmonic Generation (SHG) microscopy data automatically identifies collagen microarchitectures in tissues. This method enhances tumor edge detection, aiding pathologists in disease diagnosis.
Area of Science:
- Biomedical Optics
- Histopathology
- Medical Image Analysis
Background:
- Second Harmonic Generation (SHG) microscopy offers label-free tissue imaging, revealing morphology and collagen structure crucial for disease detection.
- Increasing data volumes necessitate automated image analysis tools for reliable, user-independent histopathological diagnosis.
- Understanding collagen microarchitecture is key to identifying pathological changes in tissues.
Purpose of the Study:
- To develop and validate an automated image analysis method using phasor parameters for collagen microarchitecture characterization in histopathology.
- To assess the efficacy of the proposed method in discriminating between different collagen organizations and identifying tumor boundaries.
- To explore the potential of phasor-based SHG analysis as a supportive tool for standard histopathology.
Main Methods:
- Utilized a 2-dimensional phasor-based approach (μMAPPS) with polarization-dependent SHG signals.
- Employed a clustering algorithm to automatically recover collagen microarchitectures from phasor parameters.
- Analyzed mesoscopic collagen fibril orientation and anisotropy in mouse cancer xenograft sections.
Main Results:
- Successfully recovered distinct collagen microarchitectures within the extracellular matrix.
- Quantified local spatial heterogeneity of collagen fibrils to discriminate tissue organizations.
- "Fibril entropy" parameter effectively highlighted tumor edges by assessing tissue order.
- Demonstrated identification of tumor areas versus surrounding skin tissue based on collagen organization.
Conclusions:
- The μMAPPS method, leveraging phasor parameters, enables automated characterization of collagen microarchitecture in histopathology.
- The "fibril entropy" parameter shows significant potential for automatic segmentation of tumor boundaries.
- This approach, combined with morphological information, can serve as a valuable adjunct to conventional histopathology for disease diagnosis.
Related Concept Videos
Dimensional Analysis
60.2K
Dimensional analysis, also known as the factor label method, is a versatile approach for mathematical operations. The main principle behind this approach is: the units of quantities must be subjected to the same mathematical operations as their associated numbers. This method can be applied to computations ranging from simple unit conversions to more complex and multi-step calculations involving several different quantities and their units.
Conversion Factors and Dimensional Analysis
The unit...
Conversion Factors and Dimensional Analysis
The unit...
60.2K
Dimensional Analysis
652
Dimensional analysis is a valuable technique in fluid mechanics for simplifying complex problems by reducing them into dimensionless groups. These groups capture the essential relationships between the variables involved, allowing researchers and engineers to analyze fluid flow without dealing with each variable individually. This approach reduces the number of independent variables, allowing for easier analysis and better understanding of physical phenomena.
In fluid mechanics, dimensional...
In fluid mechanics, dimensional...
652
Dimensional Analysis
2.1K
Dimensional analysis is a powerful tool that is used in physics and engineering to understand and predict the behavior of physical systems. The basic idea behind dimensional analysis is to express physical quantities in terms of fundamental dimensions such as the mass, length, and time. Derived dimensions like the velocity, acceleration, and force are derived from the combinations of these fundamental dimensions.
Dimensional analysis allows us to analyze and compare physical quantities on a...
Dimensional analysis allows us to analyze and compare physical quantities on a...
2.1K
Dimensional Analysis
23.5K
The concept of dimension is important because every mathematical equation linking physical quantities must be dimensionally consistent, implying that mathematical equations must meet the following two rules. The first rule is that, in an equation, the expressions on each side of the equal sign must have the same dimensions. This is fairly intuitive since we can only add or subtract quantities of the same type (dimension). The second rule states that, in an equation, the arguments of any of the...
23.5K
Phasors
1.1K
Phasors are a powerful mathematical tool used to analyze alternating current (AC) circuits. They provide a complex number representation of sinusoids, with the magnitude of the phasor equating to the amplitude of the sinusoid and the angle of the phasor representing the phase measured from the positive x-axis.
One of the significant benefits of using phasors is that they simplify the analysis of AC circuits by eliminating the time dependence of the current and voltage. This transformation...
One of the significant benefits of using phasors is that they simplify the analysis of AC circuits by eliminating the time dependence of the current and voltage. This transformation...
1.1K
Harmonic Mean
3.6K
The arithmetic mean is usually skewed towards the larger values in the data set. Therefore, to avoid this inherent bias towards smaller values, the harmonic mean is used.
Take the example of the speed of a car, which is the measure of the rate of distance traveled. If the vehicle traverses the same distance back-and-forth, its average speed equals the total distance traveled divided by the total time taken. However, if the car moves with varying speeds, then the arithmetic mean is more skewed...
Take the example of the speed of a car, which is the measure of the rate of distance traveled. If the vehicle traverses the same distance back-and-forth, its average speed equals the total distance traveled divided by the total time taken. However, if the car moves with varying speeds, then the arithmetic mean is more skewed...
3.6K


