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Updated: Jan 22, 2026

Breath Collection from Children for Disease Biomarker Discovery
Published on: February 14, 2019
Increased Fecal Lactobacillus Is Associated With a Positive Glucose Hydrogen Breath Test in Bangladeshi Children
Jeffrey R Donowitz1,2, Hardik I Parikh3, Mami Taniuchi2
1Division of Pediatric Infectious Diseases, Children's Hospital of Richmond at Virginia Commonwealth University, Richmond, Virginia.
Insights
Small intestine bacterial overgrowth (SIBO) in children from low-income countries is linked to malnutrition. A study found an overgrowth of Lactobacillus bacteria in children with SIBO, suggesting a potential cause for this association.
Area of Science:
- Microbiome research
- Pediatric gastroenterology
- Nutritional science
Background:
- Glucose hydrogen breath testing is a noninvasive method to diagnose small intestine bacterial overgrowth (SIBO).
- SIBO is prevalent in children from low-income countries and associated with malnutrition and stunted growth.
- The specific microbiome alterations in SIBO-positive children in these settings are not well understood.
Purpose of the Study:
- To investigate the gut microbiome composition in Bangladeshi children with SIBO.
- To identify specific bacterial genera associated with SIBO positivity in this population.
Main Methods:
- 16S V4 rDNA microbiome sequencing was performed on stool samples from 90 children.
- Children were tested for SIBO using glucose hydrogen breath testing.
- Linear discriminant analysis effect size was used to identify differentially abundant taxa.
Main Results:
- Lactobacillus was identified as significantly over-represented in SIBO-positive children (15 out of 90).
- The association was confirmed using Wilcoxon's rank-sum test to avoid outlier bias.
Conclusions:
- SIBO positivity in children from low-income settings may be characterized by an upper intestinal Lactobacillus bloom.
- This Lactobacillus overgrowth could contribute to gut damage and inflammation, leading to malnutrition.
- Further research is needed to elucidate the causal mechanisms linking SIBO, Lactobacillus, and malnutrition.
Background:
Glucose hydrogen breath testing is a noninvasive test for small intestine bacterial overgrowth (SIBO). A positive glucose hydrogen breath test is common in children from low-income countries and has been found to be associated with malnutrition as measured by stunted growth. The microbiome associated with positive breath testing is relatively unstudied.
Methods:
We performed 16 S V4 rDNA microbiome analysis on the stool of 90 Bangladeshi children aged 2 years from an impoverished neighborhood who were tested at the same time for SIBO by glucose hydrogen breath testing. Data were analyzed by linear discriminant analysis effect size with SIBO as the outcome. Any selected genera were tested individually by Wilcoxon's rank-sum test to ensure that linear discriminant analysis effect size results were not outlier-skewed.
Results:
Linear discriminant analysis effect size analysis identified Lactobacillus (linear discriminate analysis score, 4.59; P = .03) as over-represented in 15 out of the 90 children who were SIBO positive.
Conclusions:
These results suggest that glucose hydrogen breath test positivity in children from low-income settings may be due to an upper intestinal Lactobacillus bloom, potentially explaining the association of SIBO with the gut damage and inflammation that leads to malnutrition.
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