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Performing an In Vitro Genome-Wide CRISPR Knockout Screen in Chimeric Antigen Receptor T Cells
Published on: January 31, 2025
Genome-wide screening of mouse knockouts reveals novel genes required for normal integumentary and oculocutaneous
Bret A Moore1, Ann M Flenniken2,3, Dave Clary4
1William R. Pritchard Veterinary Medical Teaching Hospital, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
Abstract:
Oculocutaneous syndromes are often due to mutations in single genes. In some cases, mouse models for these diseases exist in spontaneously occurring mutations, or in mice resulting from forward mutatagenesis screens. Here we present novel genes that may be causative for oculocutaneous disease in humans, discovered as part of a genome-wide screen of knockout-mice in a targeted single-gene deletion project. The International Mouse Phenotyping Consortium (IMPC) database (data release 10.0) was interrogated for all mouse strains with integument abnormalities, which were then cross-referenced individually to identify knockouts with concomitant ocular abnormalities attributed to the same targeted gene deletion. The search yielded 307 knockout strains from unique genes with integument abnormalities, 226 of which have not been previously associated with oculocutaneous conditions. Of the 307 knockout strains with integument abnormalities, 52 were determined to have ocular changes attributed to the targeted deletion, 35 of which represent novel oculocutaneous genes. Some examples of various integument abnormalities are shown, as well as two examples of knockout strains with oculocutaneous phenotypes. Each of the novel genes provided here are potentially relevant to the pathophysiology of human integumentary, or oculocutaneous conditions, such as albinism, phakomatoses, or other multi-system syndromes. The novel genes reported here may implicate molecular pathways relevant to these human diseases and may contribute to the discovery of novel therapeutic targets.
Insights
Researchers identified 35 novel genes potentially causing human oculocutaneous conditions through a genome-wide screen of knockout mice with skin and eye abnormalities. This discovery advances understanding of genetic disorders like albinism.
Area of Science:
- Genetics
- Developmental Biology
- Ophthalmology
Background:
- Oculocutaneous syndromes often result from single-gene mutations.
- Mouse models are crucial for studying these genetic conditions.
- Novel gene discovery is essential for understanding disease pathophysiology.
Purpose of the Study:
- To identify novel genes associated with human oculocutaneous conditions.
- To leverage genome-wide screens of knockout mice for gene discovery.
- To expand the understanding of genetic underpinnings of skin and eye disorders.
Main Methods:
- Utilized the International Mouse Phenotyping Consortium (IMPC) database.
- Screened knockout mouse strains for integument abnormalities.
- Cross-referenced strains to identify concomitant ocular abnormalities linked to targeted gene deletions.
Main Results:
- Identified 307 knockout strains with integument abnormalities.
- Found 52 strains with ocular changes linked to targeted deletions.
- Discovered 35 novel genes potentially causative for oculocutaneous conditions.
Conclusions:
- The identified novel genes are potentially relevant to human integumentary and oculocutaneous diseases.
- These genes may implicate new molecular pathways in conditions like albinism.
- This research could lead to the discovery of novel therapeutic targets for genetic disorders.
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