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Updated: Jan 21, 2026

Successful In vivo Calcium Imaging with a Head-Mount Miniaturized Microscope in the Amygdala of Freely Behaving Mouse
Published on: August 26, 2020
Miniaturized microscope with flexible light source input for neuronal imaging and manipulation in freely behaving
Sakthivel Srinivasan1, Takuma Hosokawa1, Pablo Vergara1
1International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-0006, Japan.
Researchers developed a new miniaturized microscope for simultaneous neural imaging and optogenetic manipulation in freely moving animals. This tool enables causal links between neuronal activity and behavior by silencing specific neurons.
Area of Science:
- Neuroscience
- Bioengineering
- Genetics
Background:
- Understanding neuronal function requires simultaneous observation and control of specific neural populations.
- Current tools often lack the flexibility or accessibility for in-vivo cellular-level studies in behaving animals.
Purpose of the Study:
- To design and validate a novel, miniaturized microscope (miniscope) for integrated fluorescence imaging and optogenetic manipulation.
- To enable cellular-level investigation of neuronal populations in freely behaving subjects.
Main Methods:
- Developed a compact miniscope with an integrated optical connector for versatile light source integration.
- Utilized open-source software for ease of construction and modification.
- Demonstrated simultaneous calcium imaging (jGCaAMP7c) and optogenetic silencing (Jaws) of hippocampal CA1 neurons.
Main Results:
- The miniscope successfully enabled simultaneous cellular-level fluorescence imaging and optogenetic manipulation in freely behaving animals.
- The device's flexible design allowed for the use of different sensors and optogenetic tools.
- Specific hippocampal neurons were optogenetically silenced while monitoring their activity.
Conclusions:
- This novel miniscope provides a powerful and accessible platform for studying causal relationships between neural circuit dynamics and behavior.
- The technology facilitates research into the functional roles of genetically defined neuronal populations.
- It advances the capability to link neural network activity to observable actions in real-time.
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