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Updated: Jan 21, 2026

Patient Derived Cell Culture and Isolation of CD133+ Putative Cancer Stem Cells from Melanoma
Published on: March 13, 2013
CD133 Is Associated with Increased Melanoma Cell Survival after Multikinase Inhibition
Cynthia M Simbulan-Rosenthal1, Anirudh Gaur1, Hengbo Zhou1,2
1Department of Biochemistry and Molecular Biology, Georgetown University School of Medicine, Washington, DC 20007, USA.
Abstract:
FDA-approved kinase inhibitors are now used for melanoma, including combinations of the MEK inhibitor trametinib, and BRAF inhibitor dabrafenib for BRAFV600 mutations. NRAS-mutated cell lines are also sensitive to MEK inhibition in vitro, and NRAS-mutated tumors have also shown partial response to MEK inhibitors. However, melanoma still has high recurrence rates due to subpopulations, sometimes described as "melanoma initiating cells," resistant to treatment. Since CD133 is a putative cancer stem cell marker for different cancers, associated with decreased survival, we examined resistance of patient-derived CD133(+) and CD133(-) melanoma cells to MAPK inhibitors. Human melanoma cells were exposed to increasing concentrations of trametinib and/or dabrafenib, either before or after separation into CD133(+) and CD133(-) subpopulations. In parental CD133-mixed lines, the percentages of CD133(+) cells increased significantly (p<0.05) after high-dose drug treatment. Presorted CD133(+) cells also exhibited significantly greater (p<0.05) IC50s for single and combination MAPKI treatment. siRNA knockdown revealed a causal relationship between CD133 and drug resistance. Microarray and qRT-PCR analyses revealed that ten of 18 ABC transporter genes were significantly (P<0.05) upregulated in the CD133(+) subpopulation, while inhibition of ABC activity increased sensitivity, suggesting a mechanism for increased drug resistance of CD133(+) cells.
Insights
Melanoma cells expressing CD133 are resistant to MAPK inhibitors like trametinib and dabrafenib. This resistance is linked to increased ABC transporter activity, suggesting CD133 as a target for overcoming treatment resistance.
Area of Science:
- Oncology
- Cancer Biology
- Pharmacology
Background:
- FDA-approved kinase inhibitors, including MEK (trametinib) and BRAF (dabrafenib) inhibitors, are used for melanoma treatment.
- Melanoma recurrence is high due to treatment-resistant subpopulations, potentially cancer stem cells.
- CD133 is a marker associated with cancer stem cells and poorer survival across various cancers.
Purpose of the Study:
- To investigate the role of CD133 in melanoma cell resistance to MAPK inhibitors.
- To determine if CD133(+) melanoma cells exhibit differential sensitivity to trametinib and dabrafenib.
- To elucidate the mechanisms underlying CD133-mediated drug resistance.
Main Methods:
- Patient-derived melanoma cells were separated into CD133(+) and CD133(-) subpopulations.
- Cells were treated with increasing concentrations of trametinib and/or dabrafenib.
- Drug sensitivity was assessed by IC50 values.
- siRNA knockdown, microarray, and qRT-PCR were used to analyze gene expression and functional relationships.
Main Results:
- CD133(+) melanoma cells showed significantly greater resistance (higher IC50s) to MAPK inhibitors compared to CD133(-) cells.
- The percentage of CD133(+) cells increased after high-dose drug treatment in mixed populations.
- siRNA knockdown of CD133 reversed drug resistance.
- Ten of 18 ABC transporter genes were upregulated in CD133(+) cells, and inhibiting ABC activity enhanced drug sensitivity.
Conclusions:
- CD133 expression confers significant resistance to MAPK inhibitors in melanoma.
- Upregulation of ABC transporters in CD133(+) cells contributes to this drug resistance.
- Targeting CD133 or ABC transporter activity may represent novel therapeutic strategies to overcome melanoma treatment resistance.
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