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Updated: Jan 21, 2026

Profiling Sensitivity to Targeted Therapies in EGFR-Mutant NSCLC Patient-Derived Organoids
Published on: November 22, 2021
Concomitant Genetic Alterations are Associated with Worse Clinical Outcome in EGFR Mutant NSCLC Patients Treated with
Shih-Chieh Chang1, Yi-Chun Lai2, Cheng-Yu Chang3
1Division of Chest Medicine, Department of Internal Medicine, National Yang-Ming, University Hospital, Yi-Lan, Taiwan; Department of Critical Care Medicine, National Yang-Ming University Hospital, Yi-Lan, Taiwan.
Abstract:
Epidermal growth factor receptor- tyrosine kinase inhibitors (EGFR-TKI) are recommended first-line therapy for advanced non-small cell lung cancer (NSCLC) with sensitizing EGFR mutations. It is of clinical interest to identify concurrent genetic mutations in NSCLC patients with EGFR mutations in the hopes of discovering predictive biomarkers towards EGFR-TKI treatment. We retrospectively analyzed a cohort of patients with advanced EGFR mutant NSCLC who underwent treatment with first generation TKIs at our hospital by a multi-gene panel via next generation sequencing. A total of 33 patients with mutant EGFR were enrolled. Up to 26 (78.8%) patients had at least one concomitant genetic alteration coexisting with mutant EGFR. Among the concomitant genetic alterations discovered, TP53 mutation was most common (n = 10,30.3%), followed by CDK4 (n = 8, 24.2%) and CDKN2A (n = 7, 21.2%)copy number variation (CNV). Progression-free survival was shorter in patients with concomitant FGFR3 mutation (1.6 vs. 12.6 months, P = .003) and CDKN2A CNV loss (6.5 vs. 13.4months, P = .019). Patients with any concomitant genetic alterations also had significant worse overall survival (24.1 vs. 40.8 months, P = .029). In summary, our study revealed an unfavorable association between concomitant genetic mutations and treatment response towards EGFR-TKI. FGFR3 mutation and CDKN2A CNV loss may be potential predictive markers for treatment outcome and warrant further investigation.
Insights
Concurrent genetic mutations in advanced non-small cell lung cancer (NSCLC) with EGFR mutations are linked to poorer response to EGFR-tyrosine kinase inhibitor (TKI) therapy. FGFR3 mutations and CDKN2A copy number variation loss may predict outcomes.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Epidermal growth factor receptor-tyrosine kinase inhibitors (EGFR-TKIs) are standard first-line treatment for advanced non-small cell lung cancer (NSCLC) with EGFR mutations.
- Identifying co-occurring genetic alterations may reveal biomarkers for predicting EGFR-TKI treatment efficacy.
Purpose of the Study:
- To investigate the prevalence of concomitant genetic alterations in advanced EGFR-mutant NSCLC patients treated with first-generation TKIs.
- To explore the association between these co-occurring mutations and treatment outcomes.
Main Methods:
- Retrospective analysis of 33 advanced EGFR-mutant NSCLC patients treated with first-generation TKIs.
- Multi-gene panel next-generation sequencing to identify genetic alterations.
- Correlation analysis between genetic alterations and progression-free survival (PFS) and overall survival (OS).
Main Results:
- 78.8% of patients had at least one concomitant genetic alteration.
- TP53 mutations were most frequent (30.3%), followed by CDK4 (24.2%) and CDKN2A copy number variation (CNV) (21.2%).
- FGFR3 mutations and CDKN2A CNV loss were associated with significantly shorter PFS.
- Any concomitant genetic alteration correlated with worse OS.
Conclusions:
- Concurrent genetic mutations are common in advanced EGFR-mutant NSCLC and are unfavorably associated with EGFR-TKI treatment response.
- FGFR3 mutations and CDKN2A CNV loss show potential as predictive biomarkers for treatment outcomes in this patient population.
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