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Updated: Jan 20, 2026
Deep-Tissue Imaging of a Zebrafish Brain Using a Three-Photon Fluorescence Microscope
Published on: June 17, 2025
Fast 3-D Imaging of Brain Organoids With a New Single-Objective Planar-Illumination Two-Photon Microscope.
Irina Rakotoson1,2,3,4, Brigitte Delhomme1,2,3, Philippe Djian1,2,3
1Centre National de la Recherche Scientifique (CNRS) UMR 8118, Brain Physiology Laboratory, Paris, France.
We developed a novel 2-photon spinning disk microscope for advanced 3D imaging of human stem cell models. This microscope offers faster imaging, reduced photobleaching, and deeper penetration for disease research.
Area of Science:
- Biomedical Engineering
- Neuroscience
- Stem Cell Biology
Background:
- Human induced pluripotent stem cells (hiPSCs) are valuable for disease modeling, enabling studies from subcellular signaling to complex brain organoids.
- Advanced microscopy is crucial for imaging these 3D models, requiring a balance of optical sectioning, resolution, speed, and low invasiveness.
Purpose of the Study:
- To develop and characterize a novel microscope combining features of confocal and light-sheet microscopy for high-resolution 3D imaging of hiPSC-derived models.
- To overcome limitations of existing microscopy techniques for imaging complex biological structures like brain organoids.
Main Methods:
- A planar two-photon (2P) excitation microscope was engineered using a modified Nipkow-Petráň spinning-disk system with integrated micro-optics for virtual light-sheet generation.
- The system utilizes a single objective for both excitation scanning and fluorescence collection, coupled to a sCMOS camera for detection.
- Imaging was performed on 3D embryonic bodies (EBs) and brain organoids, both uncleared and partially cleared.
Main Results:
- The developed 2P-spinning disk microscope achieved high-resolution 3D imaging of hiPSC-derived tissues.
- Compared to confocal laser-scanning microscopy (CLSM), the new instrument demonstrated one order of magnitude faster imaging speeds.
- The microscope exhibited reduced photobleaching and enhanced depth penetration, crucial for thick biological samples.
Conclusions:
- The novel 2P-spinning disk microscope provides a powerful tool for advanced 3D imaging of hiPSC-based disease models.
- This technology enables more efficient and less damaging investigation of complex neural structures and developmental processes.
- The instrument's performance surpasses traditional CLSM for specific applications in stem cell research and neuroscience.
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Deep-Tissue Imaging of a Zebrafish Brain Using a Three-Photon Fluorescence Microscope
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