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Updated: Jan 19, 2026

CRISPR-Mediated Base Editing Tools: A Genome Editing Technique to Induce Targeted Base Substitution
Guide RNA modification as a way to improve CRISPR/Cas9-based genome-editing systems
Julia Filippova1, Anastasiya Matveeva2, Evgenii Zhuravlev1
1Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, Lavrentiev Avenue, 8, 630090, Novosibirsk, Russia.
CRISPR gene editing using ribonucleoprotein complexes offers advantages over plasmid systems. Modifying synthetic single-guide RNAs (sgRNAs) enhances their function and reduces unwanted cellular effects for improved genome editing outcomes.
Area of Science:
- Molecular Biology
- Genetics
- Biotechnology
Background:
- CRISPR systems are powerful tools for targeted gene expression regulation and creating genetically modified organisms.
- Traditional CRISPR/Cas9 plasmid delivery methods have drawbacks due to the presence of exogenous DNA within cells.
- Ribonucleoprotein (RNP) complexes offer a promising alternative for CRISPR delivery, enabling better control and fewer off-target mutations.
Purpose of the Study:
- To review strategies for improving synthetic guide RNA (sgRNA) function in CRISPR gene editing.
- To highlight the benefits of nucleotide modifications in synthetic sgRNAs.
- To discuss methods for enhancing sgRNA stability, efficacy, and reducing cellular toxicity.
Main Methods:
- Review of current literature on CRISPR/Cas9 delivery systems.
- Analysis of artificial RNA synthesis strategies for sgRNA modification.
- Examination of nucleotide modifications impacting RNA stability, binding affinity, and immunogenicity.
Main Results:
- Synthetic sgRNAs can be engineered with backbone alterations, native motifs, and labels.
- RNA modifications can increase resistance to hydrolysis and improve RNA-protein/RNA-DNA complex stability.
- Modified sgRNAs demonstrate reduced immunogenic and cytotoxic effects compared to unmodified versions.
Conclusions:
- Nucleotide modification of synthetic sgRNAs is a key strategy to enhance CRISPR gene editing efficiency and safety.
- The RNP delivery method combined with modified sgRNAs offers a superior alternative to plasmid-based CRISPR systems.
- Further research into synthetic sgRNA modifications will advance the application of genome editing technologies.
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