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Removing segmentation inconsistencies with semi-supervised non-adjacency constraint.

Pierre-Antoine Ganaye1, Michaël Sdika1, Bill Triggs2

  • 1Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69100, LYON, France.

Medical Image Analysis
|September 10, 2019
PubMed
Summary

This study introduces NonAdjLoss, a novel method to improve anatomical region segmentation in medical images by penalizing incorrect spatial relationships. This deep learning technique enhances accuracy, especially with limited labeled data.

Keywords:
Anatomical adjacency constraintsBrain-region segmentationMagnetic resonance imagingSemi-supervised training

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Area of Science:

  • Medical image analysis
  • Deep learning
  • Computer vision

Background:

  • Deep learning advances medical image analysis, yet segmentation faces challenges like data variability and exploiting anatomical knowledge.
  • Accurate segmentation of anatomical regions is crucial for diagnosis and treatment planning.

Purpose of the Study:

  • To improve region-labeling consistency in medical image segmentation using deep learning.
  • To address the challenge of incorporating anatomical knowledge into segmentation networks.

Main Methods:

  • Introduction of NonAdjLoss, an adjacency-graph based auxiliary training loss.
  • NonAdjLoss penalizes anatomically-incorrect adjacency relationships in segmentation outputs.
  • The method supports both fully-supervised and semi-supervised training extensions.

Main Results:

  • Substantial reduction in segmentation anomalies observed.
  • Demonstrated effectiveness on brain MRI (MICCAI-2012, IBSRv2) and whole-body CT (Anatomy3) datasets.
  • Performance significantly improved with the semi-supervised training extension.

Conclusions:

  • NonAdjLoss enhances deep learning-based medical image segmentation by enforcing anatomical consistency.
  • The proposed loss function is effective in reducing segmentation errors, particularly in semi-supervised settings.
  • This approach offers a promising direction for more reliable automated medical image analysis.