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GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats
Eric T Dawson1,2, Richard Durbin1
1Human Genetics, Wellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK.
Journal of Open Source Software
|September 20, 2019
Abstract
Summary:
GFA has emerged as a standard format for the exchange of genome assemblies and sequence graphs. To encourage further adoption in high-performance software we have developed an open-source C++ library for GFA and a set of utilities for summarizing and manipulating the format.
Availability:
The gfakluge source code is freely available under the MIT license at https://github.com/edawson/gfakluge. It has been tested on both Mac OS X and Linux.
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