Related Experiment Video
Updated: Jan 6, 2026

An In Vitro Batch-culture Model to Estimate the Effects of Interventional Regimens on Human Fecal Microbiota
Published on: July 31, 2019
Cooking shapes the structure and function of the gut microbiome
Rachel N Carmody1,2,3, Jordan E Bisanz4, Benjamin P Bowen5,6
1Department of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA. carmody@fas.harvard.edu.
Cooking raw plant foods significantly alters the gut microbiome in mice and humans. This reshaping impacts host energy by improving starch digestion and plant compound breakdown, suggesting co-evolution.
Area of Science:
- Microbiome research
- Nutritional science
- Human evolution
Background:
- Diet significantly influences gut microbial composition and function, often more than host genetics.
- While dietary ingredients have been extensively studied, the impact of food preparation methods like cooking on the microbiome is less understood.
Purpose of the Study:
- To investigate how cooking plant-based foods affects the gut microbiome.
- To explore the mechanisms behind these changes and their impact on host energy metabolism.
- To determine if these effects are conserved in humans.
Main Methods:
- Comparison of raw versus cooked plant diets in murine models.
- Analysis of gut microbial structure and function.
- Assessment of host energy status and metabolic changes.
- Validation of findings in human subjects.
Main Results:
- Cooking plant diets significantly reshaped the gut microbiome in mice.
- Observed changes were linked to enhanced starch digestibility and degradation of plant compounds.
- Microbiota shifts influenced host energy metabolism.
- Similar effects were detected in human participants.
Conclusions:
- The form of food, specifically whether it is raw or cooked, is a critical factor in diet-microbe interactions.
- Cooking alters the gut microbiome, affecting host energy status through improved nutrient availability.
- These findings suggest a unique evolutionary pressure on the human microbiome due to the practice of cooking.
Related Concept Videos
Anatomy of the Intestines
Small Intestines
The small intestine is an ~7 meter-long tube with an inner diameter of just 2.5 cm. Since most nutrients are absorbed here, the inner lining of the...
Bacterial Flora of the Large Intestine
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.
Histology of the Small Intestine
The intestinal lining features transverse folds called circular folds, each housing fingerlike projections known as intestinal villi. These villi are covered by a layer of simple columnar epithelium, also referred to as...
Mechanical and Chemical Digestion in the Small Intestine
Mechanical digestion in the small intestine involves movements such as segmentations and migrating motility complexes (MMCs), primarily controlled by the myenteric plexus. Segmentations are localized contractions occurring in areas of the intestine distended by chyme—a mixture of partially digested food. These contractions mix chyme with digestive juices, facilitating...
Digestive Functions of the Large Intestine
As the chyme moves to the colon, it triggers two characteristic sluggish contractions - haustral churning and mass peristalsis. Haustral churning involves the rhythmic contraction and relaxation...
Regulation of the Digestive System
The effectors in this regulation system are glands and smooth muscles. Activation of...

