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Updated: Jan 6, 2026

Dual CRISPR-Interference Strategy for Targeting Synthetic Lethal Interactions Between Non-Coding RNAs in Cancer Cells
Published on: May 30, 2025
Synthetic Lethal Interaction of SHOC2 Depletion with MEK Inhibition in RAS-Driven Cancers
Rita Sulahian1, Jason J Kwon2, Katherine H Walsh1
1Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Abstract:
The mitogen-activated protein kinase (MAPK) pathway is a critical effector of oncogenic RAS signaling, and MAPK pathway inhibition may be an effective combination treatment strategy. We performed genome-scale loss-of-function CRISPR-Cas9 screens in the presence of a MEK1/2 inhibitor (MEKi) in KRAS-mutant pancreatic and lung cancer cell lines and identified genes that cooperate with MEK inhibition. While we observed heterogeneity in genetic modifiers of MEKi sensitivity across cell lines, several recurrent classes of synthetic lethal vulnerabilities emerged at the pathway level. Multiple members of receptor tyrosine kinase (RTK)-RAS-MAPK pathways scored as sensitizers to MEKi. In particular, we demonstrate that knockout, suppression, or degradation of SHOC2, a positive regulator of MAPK signaling, specifically cooperated with MEK inhibition to impair proliferation in RAS-driven cancer cells. The depletion of SHOC2 disrupted survival pathways triggered by feedback RTK signaling in response to MEK inhibition. Thus, these findings nominate SHOC2 as a potential target for combination therapy.
Insights
Combining MEK inhibitors with SHOC2 targeting shows promise for RAS-driven cancers. Depleting SHOC2 disrupts survival pathways, impairing proliferation in KRAS-mutant pancreatic and lung cancer cells.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The mitogen-activated protein kinase (MAPK) pathway is crucial in oncogenic RAS signaling.
- Targeting the MAPK pathway, particularly with MEK inhibitors (MEKi), is a potential combination treatment strategy for cancers.
Purpose of the Study:
- To identify genes that cooperate with MEK inhibition in KRAS-mutant pancreatic and lung cancer.
- To explore synthetic lethal interactions and novel therapeutic targets for RAS-driven cancers.
Main Methods:
- Genome-scale loss-of-function CRISPR-Cas9 screens were conducted in KRAS-mutant cancer cell lines treated with a MEK1/2 inhibitor.
- Investigated the role of specific genes, including SHOC2, in sensitizing cancer cells to MEK inhibition.
Main Results:
- Identified recurrent classes of synthetic lethal vulnerabilities at the pathway level, with several receptor tyrosine kinase (RTK)-RAS-MAPK pathway members sensitizing cells to MEKi.
- Demonstrated that SHOC2 (a positive regulator of MAPK signaling) knockout, suppression, or degradation specifically cooperated with MEK inhibition to impair cancer cell proliferation.
- Showed that SHOC2 depletion disrupted survival pathways activated by feedback RTK signaling in response to MEK inhibition.
Conclusions:
- SHOC2 is a key sensitizer to MEK inhibition in RAS-driven cancers.
- Targeting SHOC2 in combination with MEK inhibitors presents a potential therapeutic strategy for treating KRAS-mutant pancreatic and lung cancers.
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